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View Structure Prediction Details

Protein: gi|7494194
Organism: Plasmodium falciparum
Length: 498 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|7494194.

Description E-value Query
Range
Subject
Range
DPOD2_ARATH - DNA polymerase delta small subunit OS=Arabidopsis thaliana GN=POLD2 PE=2 SV=2
449.0 [0..79] [498..2]
DPOD2_ORYSJ - DNA polymerase delta small subunit OS=Oryza sativa subsp. japonica GN=POLD2 PE=2 SV=1
DPOD2_ORYSA, DPD... - DNA polymerase delta small subunit (EC 2.7.7.7) - Oryza sativa (Rice), (Q9LRE5) DNA polymerase delta...
448.0 [0..86] [497..1]
gi|83282443 - gi|83282443|ref|XP_729773.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL]
gi|23488516 - gi|23488516|gb|EAA21338.1| hypothetical protein [Plasmodium yoelii yoelii]
418.0 [0..1] [496..1]
gi|182891524, gi... - gi|28279582|gb|AAH45410.1| Pold2 protein [Danio rerio], gi|182891524|gb|AAI64684.1| Pold2 protein [D...
414.0 [0..82] [493..19]
gi|21064173 - gi|21064173|gb|AAM29316.1| AT27586p [Drosophila melanogaster]
409.0 [0..88] [497..4]

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Predicted Domain #1
Region A:
Residues: [1-252]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDEKVTNQEV EEIIKHINEN KKNEGEHQNK KIKKKHFEYV NLSERFIITC PTYTQQFSHI  60
   61 YSLRIKIMKT LLMRTIEDIV KKEEGNEKKK KNINNDNINN NDNINNDNIN NNDNINNDNI 120
  121 NNDNINNNDN INNYNNYHIL QYLKEIKVNE KCYCIGTIFK KMELRPSILN EYLSEISILN 180
  181 NTINYTHDED ILFLEDETAR LKLEGNINSD FYITGLTVIV KGIGMSNGSL YVEEIIYSYI 240
  241 PKLDIPNCIS ND

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [253-392]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DKFILFVSGL YINELNKSIN NISLLRNFIL RLHGDTYLSE NLIRLIILGN SLSNIDNDEK  60
   61 DMNTIDVFLS SLCSSIHIDL MPGDKDPSDS NLPQQPFPNI FFKKARNFNS FQCVTNPYLF 120
  121 SIDNINICCM SGEPVHNITS 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 4.221849
Match: 2q8uA
Description: No description for 2q8uA was found.

Predicted Domain #3
Region A:
Residues: [393-498]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YSKNNKMNAL KLIAQSRILS PTSPDTLGCY PFTKNDPFCL NDDNTYPHIF INGNCSKLEV  60
   61 QYMQDHNKQL PLLVCLPNFH ISPKAFLINL KNLEYKILTF QIDEDK

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
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