YRC Public Data Repository - Protein Structure Prediction

Protein:	GG3_ARATH
Organism:	Arabidopsis thaliana
Length:	251 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GG3_ARATH.

Description	E-value	Query Range	Subject Range
gi\|114667485 - gi\|114667485\|ref\|XP_523642.2\| PREDICTED: similar to keratin associated protein 4.3 [Pan troglodytes]	153.0	[0..77]	[247..2]
gi\|94390799, gi\|... - gi\|94391983\|ref\|XP_985957.1\| PREDICTED: hypothetical protein LOC68768 [Mus musculus], gi\|94390799\|re...	152.0	[0..77]	[241..2]
gi\|109491840 - gi\|109491840\|ref\|XP_001081426.1\| PREDICTED: similar to keratin associated protein 4-7 [Rattus norveg...	151.0	[0..77]	[248..2]
KRTAP4-3 - keratin associated protein 4-3	142.0	[0..77]	[240..2]
gi\|109115346 - gi\|109115346\|ref\|XP_001104438.1\| PREDICTED: similar to keratin associated protein 4-12 isoform 3 [Ma...	135.0	[0..77]	[246..2]

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Predicted Domain #1

Region A:
Residues: [1-93]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAPSGGGEG GGKESAAGGV SSSSLAPSSL PPPRPKSPPE YPDLYGKRRE AARVQMLERE  60
   61 IGFLEGEIKF IEGVQPASRC IKEVSDFVVA NSD

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [94-251]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PLIPAQRKSR RSFRFWKWLC GPCLSLVSFC CCCQSKCSCH LRKPKCCNCT SCSCIGSKCC  60
   61 DGSCCSNICC CPRLSCPSCS CFRGCWCSCP DMSCCIPSCF RSCSCTRPSC LNKKKSSCCS 120
  121 CNCKIRWSSC FSCPKVRLCS CCFCNCKNLC SNPCCLAF

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.2	NCBI nr	03/2009
PSI-BLAST	2.2.22	FFAS	ffas03
PDB	10/2008	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits