YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|56121924, gi\|...
Organism:	Arabidopsis thaliana
Length:	455 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|56121924, gi|....

Description	E-value	Query Range	Subject Range
gi\|25408103, gi\|... - gi\|2880049\|gb\|AAC02743.1\| hypothetical protein [Arabidopsis thaliana], pir\|\|H84711 hypothetical prot...	392.0	[0..1]	[455..1]
gi\|61098262, gi\|... - gi\|61098262\|ref\|NP_001012841.1\| acyl-Coenzyme A thioesterase 2, mitochondrial [Gallus gallus], gi\|60...	325.0	[0..25]	[452..11]
ACOT9_MOUSE - Acyl-coenzyme A thioesterase 9, mitochondrial OS=Mus musculus GN=Acot9 PE=1 SV=1	318.0	[0..55]	[455..37]
ACOT9 - acyl-CoA thioesterase 9	316.0	[0..55]	[455..38]
gi\|114688002 - gi\|114688002\|ref\|XP_520975.2\| PREDICTED: acyl-Coenzyme A thioesterase 2, mitochondrial [Pan troglody...	313.0	[0..57]	[455..49]

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Predicted Domain #1

Region A:
Residues: [1-100]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRSSAGKLLS HSLRRNRGKL GDGFWIPATR SQKMWNSTVP SDENPDQNSI DAGSSMRKPI  60
   61 SLWPGMYHSP VTNALWEARR NMFEIPTGDD ASQSKLTAKS

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [101-455]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PSRSRTSILY KFSSDFVLRE QYRNPWNEIR TGKLVEDLDA LAGTISFKHC GGDSSARSMI  60
   61 LVTASVDRII MKRPIRVDTD LSIVGAVTWV GRSSMEMQLQ VLQIQDTNNS SESVALEANF 120
  121 TFVARDAQTG KSAPINQVVP ETEHEKFLWK EAEERNKLRK QKRAQGKEEH EKLKDLERLN 180
  181 ELLAEGRVFL DMPALADRNS ILIKDTSHEN SLICQPQQRN IHGRIFGGFL MRKAFELAFS 240
  241 NAYTFAGVSP RFLEVDRVDF IKPVDVGNFL RFKSRVLYTE ATSSAEPLIN IEVVAHVTSP 300
  301 ELRSSEVSNR FYFTFSVRPE AMKDGLKIRN VVPATEEEAR RVIERMDAER PISLP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	44.522879
Match:	2gvhA
Description:	No description for 2gvhA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits