YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30685971, gi\|...
Organism:	Arabidopsis thaliana
Length:	486 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30685971, gi|....

Description	E-value	Query Range	Subject Range
gi\|21554128 - gi\|21554128\|gb\|AAM63208.1\| unknown [Arabidopsis thaliana]	215.0	[0..1]	[486..1]
gi\|48892684, gi\|... - gi\|71675161\|ref\|ZP_00672907.1\| Peptidase S1, chymotrypsin:TPR repeat [Trichodesmium erythraeum IMS10...	186.0	[0..4]	[305..324]
gi\|94383220, gi\|... - gi\|94384864\|ref\|XP_993468.1\| PREDICTED: similar to CG32369-PB, isoform B [Mus musculus], gi\|94383220...	182.0	[0..10]	[478..315]
LONF3_MACFA - LON peptidase N-terminal domain and RING finger protein 3 OS=Macaca fascicularis GN=LONRF3 PE=2 SV=1	182.0	[0..38]	[484..242]
gi\|37622896, gi\|... - gi\|73695332\|gb\|AAI03492.1\| LON peptidase N-terminal domain and ring finger 3 [Homo sapiens], gi\|5720...	181.0	[0..38]	[484..242]
gi\|114689960 - gi\|114689960\|ref\|XP_529131.2\| PREDICTED: LON peptidase N-terminal domain and ring finger 3 isoform 2...	178.0	[0..38]	[476..242]
gi\|73979380 - gi\|73979380\|ref\|XP_540001.2\| PREDICTED: similar to ring finger protein 127 [Canis familiaris]	176.0	[0..10]	[478..387]

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Predicted Domain #1

Region A:
Residues: [1-266]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNEDSLPPF TLFGLDDVEN YGLVTEADNS LPLDIHNQVF QLVEKGNQSF KESRFEEAIS  60
   61 SYSKANSIKP LDPIVLGNRS AAYIRFGQYL KQRSASISEY KPLNGFDMSM LGELALKDAD 120
  121 KLMSLQSSLV KSYITKACAL MLLERYEVAR DTILSGLQID PFSGPLRSNL QELEKVMPNS 180
  181 MRKTHGMAER SDDFDCTVCL KLLYEPATTP CGHTFCRSCL FQSMDRGNKC PLCRTVIFMT 240
  241 PRTCAVSVTL NNIIEKNFPE EYAERK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	27.30103
Match:	1w3bA
Description:	The superhelical TPR domain of O-linked GlcNAc transferase reveals structural similarities to importin alpha.
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [267-377]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SEQDTLVHLG NESMPLFVMD VIIPCQKLSL HIFEPRYRLM VRRIMEGNHR MGMVALDSAT  60
   61 GSPVDVACEV EITECDPLPD GRFVLELESH RRCRIVKAWD QDGYRVAEVE W

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	12.0
Match:	2aneA
Description:	Crystal structure of N-terminal domain of E.Coli Lon Protease
Matching Structure (courtesy of the PDB):

Predicted Domain #3

Region A:
Residues: [378-486]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VKDIPPQSEQ GKADLRELTT SAASFARSWL DRAKEAARQG DRRRLEILLN VESMIPTPQD  60
   61 PERFSFWLAT LTDRRPSERL ELLRLQDTGE RIKRGLIYLR SVERGCRMQ

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits