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View Structure Prediction Details

Protein: CAX5_ARATH
Organism: Arabidopsis thaliana
Length: 441 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CAX5_ARATH.

Description E-value Query
Range
Subject
Range
CAX2_ARATH - Vacuolar cation/proton exchanger 2 OS=Arabidopsis thaliana GN=CAX2 PE=1 SV=2
312.0 [0..1] [441..1]

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Predicted Domain #1
Region A:
Residues: [1-94]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGCCKVPALI QAQVEMGLVN DVEHKSLFRR DTDSPERKAA SLMEQGSLSA SFRECSTKTP  60
   61 NNSVLQSFKI VILSNKLNLL LPFGPLAILL HYLT

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [95-266]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DNKGWIFLLS LVGITPLAER LGYATEQLAC YTGSTVGGLL NATFGNVTEL IISIFALKSG  60
   61 MIRVVQLTLL GSILSNMLLV LGCAFFCGGL VFSQKEQVFD KGNAVVNSGL LLMAVMGLLF 120
  121 PAVLHYTHSE VHAGSSELAL SRFSSCIMLV AYAAYLFFQL KSQPSSYTPL TE

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 27.455932
Match: PF01699.15
Description: No description for PF01699.15 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [267-441]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ETNQNEETSD DDEDPEISKW EAIIWLSILT AWVSLLSGYL VDAIEGASVS WKIPISFISV  60
   61 ILLPIVGNAA EHAGAIMFAM KDKLDLSLGV AIGSSIQISM FAVPFCVVIG WMMGAQMDLN 120
  121 FQLFETATLF ITVIVVAFFL QEGTSNYFKG LMLILCYLIV AASFFVHEDP HQDDI

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 34.79588
Match: PF01699.15
Description: No description for PF01699.15 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle