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View Structure Prediction Details

Protein: BOR3_ARATH
Organism: Arabidopsis thaliana
Length: 732 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for BOR3_ARATH.

Description E-value Query
Range
Subject
Range
gi|6437544 - gi|6437544|gb|AAF08571.1|AC011623_4 unknown protein [Arabidopsis thaliana]
523.0 [0..1] [732..1]
gi|92869039 - gi|92869039|gb|ABE78978.1| HCO3-transporter [Medicago truncatula]
421.0 [0..7] [678..2]
gi|77556187, gi|... - gi|77556187|gb|ABA98983.1| Boron transporter 1, putative, expressed [Oryza sativa (japonica cultivar...
419.0 [0..4] [708..2]

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Predicted Domain #1
Region A:
Residues: [1-195]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDEAESFVPF QGIKKDVKGR LNCYKQDWIS GLRAGFRILA PTTYIFFASA IPVITFGEQL  60
   61 ERDTDGKITA VQTLVSTALC GVIHSIIGGQ PLLILGVAEP TVIMYTFMFN FAKSRTDLGS 120
  121 NLFLAWTGWV CLWTGLLLFL LAVLGACTFI NRFTRLAGEL FGILIAMLFM QEAIRGIVDE 180
  181 FGVPGRTNPR SAEFQ

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [196-378]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PAWVFANGMF GLVLSSGLLY TGLKSRKARS WRFGAEWLRG FIADYGVPVM VVVWTCISYI  60
   61 PWKSVPQGIP RRLVSPNPWS PGAYQNWTVI KEMVDVPVLY ILLAVVPASM IAVLYYFDHS 120
  121 VASQLAQQED FNLRKPPAYH YDLFLLGFLT ILCGLIGIPP SNGVIPQSPM HTKSLATLNH 180
  181 QLL

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [379-459]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RNKLVAAARK CIRNNATIGE VYGSMEEAYQ QMQSPLIHQE PSRIQGLKQS HIQKASNADA  60
   61 LVDETVFDIE TEVENILPVE V

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.825 N/A N/A a.24.28 Description not found.

Predicted Domain #4
Region A:
Residues: [460-608]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KEQRVSNFLQ AMMVAGCVAA MPLIKRIPSS VLWGYFAYMA IESLPGNQFW ERIVLLFTAP  60
   61 SRRFKVLEDN HAVFIETVPF KTMAMFTLFQ TAYLLVCFGI TWVPVAGVLF PLMIMFLVPV 120
  121 RQYVLPNFFK GAHLQDLDAA EYEEAPAIL

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.849 N/A N/A a.74.1 Cyclin-like

Predicted Domain #5
Region A:
Residues: [609-732]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SFNLKPEGEV SRATSFADSG EVMDGMFTRS RGEIRKVSSL KLGGGGSGST VGSPAGGGVE  60
   61 LMRRVVSFQN PRVSEKVYIR SLSDFRGGGE ISPRSSAGRA PFSPRSATGG GGGEQRLSNL 120
  121 GKSV

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle