YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|110741994, gi...
Organism:	Arabidopsis thaliana
Length:	753 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|110741994, gi....

Description	E-value	Query Range	Subject Range
gi\|148658115, gi... - gi\|148658115\|ref\|YP_001278320.1\| NB-ARC domain-containing protein [Roseiflexus sp. RS-1], gi\|1485702...	744.0	[0..3]	[743..750]
gi\|186464325, gi... - gi\|23128981\|ref\|ZP_00110817.1\| COG2319: FOG: WD40 repeat [Nostoc punctiforme PCC 73102], gi\|18668187...	658.0	[0..157]	[746..1158]
YY46_NOSS1 - Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=... gi\|25530855 - pir\|\|AC2239 WD-40 repeat protein [imported] - Nostoc sp. (strain PCC 7120)	655.0	[0..85]	[708..865]
gi\|110168368, gi... - gi\|71673858\|ref\|ZP_00671606.1\| G-protein beta WD-40 repeat [Trichodesmium erythraeum IMS101], gi\|716...	642.0	[0..102]	[753..822]
gi\|115443476, gi... - gi\|115443476\|ref\|XP_001218545.1\| hypothetical protein ATEG_09923 [Aspergillus terreus NIH2624], gi\|1...	636.0	[0..24]	[645..637]
gi\|118397021 - gi\|118397021\|ref\|XP_001030846.1\| hypothetical protein TTHERM_01006540 [Tetrahymena thermophila] gi\|118397021, gi... - gi\|89285162\|gb\|EAR83183.1\| hypothetical protein TTHERM_01006540 [Tetrahymena thermophila SB210], gi\|...	628.0	[0..3]	[752..1679]
gi\|75701503, gi\|... - gi\|75907778\|ref\|YP_322074.1\| ribosome assembly protein 4 (RSA4) [Anabaena variabilis ATCC 29413], gi...	625.0	[0..155]	[746..1028]

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Predicted Domain #1

Region A:
Residues: [1-411]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHRVGSAGSN GGSVRTRKEK KLTYVLNDAN DTKHCAGINC LDVLKSSVSN DQSYLFTGSR  60
   61 DGTLKRWAFD EDATFCSATF ESHVDWVNDA ALAGESTLVS CSSDTTVKTW DGLSDGVCTR 120
  121 TLRQHSDYVT CLAVAAKNNN VVASGGLGGE VFIWDIEAAL SPVTKPNDAN EDSSSNGANG 180
  181 PVTSLRTVGS SNNISVQSSP SHGYTPTIAK GHKESVYALA MNDTGTMLVS GGTEKVLRVW 240
  241 DPRTGSKSMK LRGHTDNVRV LLLDSTGRFC LSGSSDSMIR LWDLGQQRCL HTYAVHTDSV 300
  301 WALACNPSFS HVYSGGRDQC LYLTDLATRE SVLLCTKEHP IQQLALQDNS IWVATTDSSV 360
  361 ERWPAEVQSP KTVFQRGGSF LAGNLSFNRA RVSLEGLNPA PAYKEPSITV P

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	67.69897
Match:	2ovpB
Description:	No description for 2ovpB was found.

Predicted Domain #2

Region A:
Residues: [412-553]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GTHPIVQHEI LNNKRQILTK DAAGSVKLWD ITRGVVVEDY GKISFEEKKE ELFEMVSIPS  60
   61 WFTVDTRLGC LSVHLETPQC FSAEMYSADL KVSGRPEDDK INLARETLKG LLGHWLAKKK 120
  121 HKPKPQVLAS GDTLSVKDTK KN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	13.522879
Match:	1l0qA
Description:	Surface layer protein
Matching Structure (courtesy of the PDB):

Predicted Domain #3

Region A:
Residues: [554-602]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LSASKTEESS AASDPVYPPF EFSSVSPPSI ITEGSQGGPW RKKITEFTG

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [603-753]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TEDEKDFPLW CLDAVLNNRL PPRENTKLSF FLHPCEGSSV QVVTLGKLSA PRILRVHKVT  60
   61 NYVVEKMVLD NPLDSLAIDA ASVSGGQPQP LFSGNGLLQS GLKPWQKLRP SIEILCNSQV 120
  121 LSPDMSLATV RAYVWKKPED LILNYRVAIA R

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	0.97
Match:	1kotA
Description:	GABA(A) receptor associated protein GABARAP
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits