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View Structure Prediction Details

Protein: LOG8_ARATH
Organism: Arabidopsis thaliana
Length: 216 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LOG8_ARATH.

Description E-value Query
Range
Subject
Range
LOG3_ARATH - Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG3 OS=Arabidopsis thaliana GN=LOG3 PE=1 S...
243.0 [0..2] [211..6]

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Predicted Domain #1
Region A:
Residues: [1-216]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEDNQRSRFR KICVFCGSHS GHREVFSDAA IELGNELVKR KIDLVYGGGS VGLMGLISRR  60
   61 VYEGGLHVLG IIPKALMPIE ISGETVGDVR VVADMHERKA AMAQEAEAFI ALPGGYGTME 120
  121 ELLEMITWSQ LGIHKKTVGL LNVDGYYNNL LALFDTGVEE GFIKPGARNI VVSAPTAKEL 180
  181 MEKMEEYTPS HMHVASHESW KVEELGDYPG QENKPQ

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 62.69897
Match: 1ydhA
Description: X-ray structure of a lysine decarboxylase-like protein from arabidopsis thaliana gene at5g11950
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 0.459062360506835 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle