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View Structure Prediction Details

Protein: gi|30698907, gi|...
Organism: Arabidopsis thaliana
Length: 385 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30698907, gi|....

Description E-value Query
Range
Subject
Range
gi|5903077, gi|2... - gi|5903077|gb|AAD55635.1|AC008017_8 Unknown protein [Arabidopsis thaliana], pir||H96753 hypothetical...
361.0 [0..1] [385..1]

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Predicted Domain #1
Region A:
Residues: [1-324]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSKNNGLSA ALVSNLQDVL SKRKVGNEEK VGSDGSAEEA PSTSDSVDVA SVEEEIDDSR  60
   61 PIVLVTNGDG IDSPGLVSLV EALVLEGLYN VHVCAPQTDK SASAHSTTPG ETIAVSSVKL 120
  121 KGATAFEVSG TPVDCISLGL SGALFAWSKP ILVISGINQG SSCGHQMFYS GAVAGGREAL 180
  181 ISGVPSLSIS LNWKKNESQE SHFKDAVGVC LPLINATIRD IAKGVFPKDC SLNIEIPTSP 240
  241 SSNKGFKVTK QSMWRQYPSW QAVSANRHPG AGNFMSNQQS LGAQLAQLGR DASAAGAARR 300
  301 FTTQKKSIVE IESVGVAGKT DTRV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 83.221849
Match: 2phjA
Description: No description for 2phjA was found.

Predicted Domain #2
Region A:
Residues: [325-385]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KKFFRLEFLA KEQEHTDEDL DVKALEDGFV SVTPFSLLPK TDSETQAAAS EWISKALNSD  60
   61 Q

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle