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View Structure Prediction Details

Protein: gi|23297505, gi|...
Organism: Arabidopsis thaliana
Length: 754 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|23297505, gi|....

Description E-value Query
Range
Subject
Range
gi|76616885 - gi|76616885|ref|XP_872774.1| PREDICTED: similar to Probable RNA-dependent helicase p72 (DEAD-box pro...
395.0 [0..260] [752..28]

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Predicted Domain #1
Region A:
Residues: [1-234]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPNATGVLK RHRSHEKFDK KRDTKKHKHV EKTIVSNPST DSPEESSIEA ESEAMVYREP  60
   61 TQYQNLLVSL GSSNKVVADM NKRRQREEEG KSDTEEDEDD EDEDEEENSG SDDLSSTDGE 120
  121 DDKSQGDDQE TLGGLTDDTQ EDNDNQSEEE DPDDYETDEE VHELSTNGQS FVDASSSISA 180
  181 FSEHLSHKLS SEEVETLPKG KWKFKWESPA FDMPNCKWKG TSENFLDGIQ SDAP

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [235-754]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YGLKPKLYNH WLQLYKKCGG KDLDSSKRRK FFSICNSYLD ILHSNKKPFY HCGSDEDSSA  60
   61 MDAYLMHSLN HIFKTRDLVK KNESKIAKHR ETSEEEILSD DGFLDQGFTR PKVLILLPLR 120
  121 SIAFRVVKRL IQLTPESQRV NVEHLDRFND EFGCEEDTDD CDGEKTTSKN GNSIKQKSSK 180
  181 PSDWQALFGA NNNDDEFMLG IKHTRKSIRL YGDFYSSDII VASPLKLHMA IGAAEENKER 240
  241 DVDYLSSIEV LVIDHADIIS MQNWSFLATV VDYLNRLPTK QHGTNVMRIR PLYLDGHARF 300
  301 YRQSIILSSY LTPEMNSLFG RHCLNYKGKM KMACEYKGVL EKVLLPVRQI YERFDAASIT 360
  361 QVDDARLEYF TKKIFPKIKD SVQGGVMIFI HSYFEFVRLR NFLNTQNTSF CLLGDYAKNA 420
  421 DISRAREQFF VGSRKIMLYT ERAYFYKRYK IRGIKNLILY SLPERKEFYP EIMNMLEEGS 480
  481 HDMMSTALFS RFDMLQLERI VGSTSAKRMI TSEKNMFAFC 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 90.522879
Match: 2db3A
Description: No description for 2db3A was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle