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View Structure Prediction Details

Protein: gi|23296847, gi|...
Organism: Arabidopsis thaliana
Length: 1115 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

No multiple sequence alignment data found for gi|23296847, gi|....

Predicted Domain #1
Region A:
Residues: [1-591]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTMMTPPPVD PEDEEMLVPN SDLVDGPAQP MEVTQPETAA STVENQPAED PPTLKFTWTI  60
   61 PNFSRQNTRK HYSDVFVVGG YKWRILIFPK GNNVDHLSMY LDVSDAASLP YGWSRYAQFS 120
  121 LAVVNQIHTR YTVRKETQHQ FNARESDWGF TSFMPLSELY DPSRGYLVND TVLVEAEVAV 180
  181 RKVLDYWSYD SKKETGFVGL KNQGATCYMN SLLQTLYHIP YFRKAVYHMP TTENDAPTAS 240
  241 IPLALQSLFY KLQYNDTSVA TKELTKSFGW DTYDSFMQHD VQELNRVLCE KLEDKMKGTV 300
  301 VEGTIQQLFE GHHMNYIECI NVDFKSTRKE SFYDLQLDVK GCKDVYASFD KYVEVERLEG 360
  361 DNKYHAEGHG LQDAKKGVLF IDFPPVLQLQ LKRFEYDFMR DTMVKINDRY EFPLELDLDR 420
  421 EDGKYLSPDA DRSVRNLYTL HSVLVHSGGV HGGHYYAFIR PTLSDQWYKF DDERVTKEDL 480
  481 KRALEEQYGG EEELPQTNPG FNNNPPFKFT KYSNAYMLVY IRESDKDKII CNVDEKDIAE 540
  541 HLRVRLKKEQ EEKEDKRRYK AQAHLYTIIK VARDEDLKEQ IGKDIYFDLV D

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 76.154902
Match: 2f1zA
Description: Crystal structure of HAUSP
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [592-680]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HDKVRSFRIQ KQTPFQQFKE EVAKEFGVPV QLQRFWIWAK RQNHTYRPNR PLTPQEELQP  60
   61 VGQIREASNK ANTAELKLFL EVEHLDLRP

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [681-853]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IPPPEKSKED ILLFFKLYDP EKAVLSYAGR LMVKSSSKPM DITGKLNEMV GFAPDEEIEL  60
   61 FEEIKFEPCV MCEHLDKKTS FRLCQIEDGD IICFQKPLVN KEIECLYPAV PSFLEYVQNR 120
  121 QLVRFRALEK PKEDEFVLEL SKQHTYDDVV EKVAEKLGLD DPSKLRLTSH NCY

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [854-992]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SQQPKPQPIK YRGVDHLSDM LVHYNQTSDI LYYEVLDIPL PELQGLKTLK VAFHHATKEE  60
   61 VVIHNIRLPK QSTVGDVINE LKTKVELSHP DAELRLLEVF YHKIYKIFPS TERIENINDQ 120
  121 YWTLRAEEIP EEEKNIGPN

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [993-1115]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DRLILVYHFA KETGQNQQVQ NFGEPFFLVI HEGETLEEIK NRIQKKLHVS DEDFAKWKFA  60
   61 FMSMGRPEYL QDTDVVYNRF QRRDVYGAFE QYLGLEHADT TPKRAYAANQ NRHAYEKPVK 120
  121 IYN

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle