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View Structure Prediction Details

Protein: gi|18402606, gi|...
Organism: Arabidopsis thaliana
Length: 378 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|18402606, gi|....

Description E-value Query
Range
Subject
Range
gi|28203058, gi|... - gi|28210620|ref|NP_781564.1| ribokinase [Clostridium tetani E88], gi|28203058|gb|AAO35501.1| ribokin...
231.0 [0..2] [365..5]

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Predicted Domain #1
Region A:
Residues: [1-378]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEPVIIGALI LDVHAKPSTT PISGTTVPGQ VLFAPGGVAR NVADCIFKLG ITPFMIGTLG  60
   61 LDGPANVLLK EWKLSMKGIL RREDISTPIV SLVYDTNGEV AAGVAGVDAV ENFLTPEWIQ 120
  121 RFEYNISSAR LLMVDANLSS LALEASCKLA AESSVPVWFE PVSVTKSQRI ASIAKYVTIV 180
  181 SPNQDELIAM ANALCAKNLF HPFRSDENKL SIEDMFRALK PAILVLLKNG VKVVIVTLGS 240
  241 NGALLCSKGN PKKALNIDRK FLRSGEVFKR VQSVCSPNRF SELGSNRSPS LFAMHFPTIP 300
  301 AKVKKLTGAG DCLVGGTVAS LSDGLDLIQS LAVGIASAKA AVESDDNVPP EFKLDLISGD 360
  361 AELVYNGAKM LMVHQSML

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Detection Method: PSI-BLAST
Confidence: 53.154902
Match: 1vm7A
Description: Crystal structure of Ribokinase (TM0960) from Thermotoga maritima at 2.15 A resolution
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 1.21468720585581 bayes_pls_golite062009
transferase activity 1.02723496131053 bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups 0.99166926796598 bayes_pls_golite062009
kinase activity 0.93808159830136 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle