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View Structure Prediction Details

Protein: gi|84778470, gi|...
Organism: Arabidopsis thaliana
Length: 200 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|84778470, gi|....

Description E-value Query
Range
Subject
Range
gi|3511287, gi|7... - pir||T31670 DNA-directed RNA polymerase (EC 2.7.7.6) II largest chain - Mastigamoeba invertens (frag...
141.0 [0..7] [190..1502]

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Predicted Domain #1
Region A:
Residues: [1-110]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEGLTLIVVM MSSFMLGGQG QQISTPCTSS MISTFTPCLN FITGSSGGSV TPTAGCCDSL  60
   61 KTLTNTGMGC ACLILTANVP LPTGFINRTL ALALPRACKM GGVPIQCQAA 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 15.0
Match: 1be2A
Description: LIPID TRANSFER PROTEIN COMPLEXED WITH PALMITATE, NMR, 10 STRUCTURES
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [111-200]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GTPLPAPGQV PFLIAPPPQV SAFSPGASKA AGTTPTQAPA PDTPADGPTG PTTKSGIRPV  60
   61 DQPMQPTGLA QSSTSPFLPL LFISLILLNL 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle