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View Structure Prediction Details

Protein: PRS8B_ARATH
Organism: Arabidopsis thaliana
Length: 419 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PRS8B_ARATH.

Description E-value Query
Range
Subject
Range
gi|119524342, gi... - gi|119719222|ref|YP_919717.1| AAA family ATPase, CDC48 subfamily protein [Thermofilum pendens Hrk 5]...
360.0 [0..2] [418..301]

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Predicted Domain #1
Region A:
Residues: [1-419]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAVGVEARP PVTAMEETCN VKGAAAKQGE GLNKYYLQHL DELQRLQREK SYNLNRLEAQ  60
   61 RNELNSRVRM LREELQLLQE PGSYVGEVVK VMGKNKVLVK VHPEGKYVVD IDKSIDITKL 120
  121 TPSTRVALRN DSYVLHLVLP SKVDPLVNLM KVEKVPDSTY DMIGGLDQQI KEIKEVIELP 180
  181 IKHPELFESL GIAQPKGVLL YGPPGTGKTL LARAVAHHTD CTFIRVSGSE LVQKYIGEGS 240
  241 RMVRELFVMA REHAPSIIFM DEIDSIGSAR MESGSGNGDS EVQRTMLELL NQLDGFEASN 300
  301 KIKVLMATNR IDILDQALLR PGRIDRKIEF PNPNEESRFD ILKIHSRKMN LMRGIDLKKI 360
  361 AEKMNGASGA ELKAVCTEAG MFALRERRVH VTQEDFEMAV AKVMKKDTEK NMSLRKLWK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 84.39794
Match: 1oz4A
Description: VCP/p97
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
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