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View Structure Prediction Details

Protein: EPF2_ARATH
Organism: Arabidopsis thaliana
Length: 120 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for EPF2_ARATH.

Description E-value Query
Range
Subject
Range
gi|114841635 - gi|114841635|dbj|BAF32119.1| pollen allergen [Cryptomeria japonica]
136.0 [0..23] [115..415]

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Predicted Domain #1
Region A:
Residues: [1-120]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTKFVRKYMF CLVLVFAACS LVVNSIRTPP LKNTVNGGEK KNADIEQAQT HHKKEISKNG  60
   61 GVEMEMYPTG SSLPDCSYAC GACSPCKRVM ISFECSVAES CSVIYRCTCR GRYYHVPSRA 120
  121 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.434 a.80.1 DNA polymerase III clamp loader subunits, C-terminal domain
View Download 0.354 a.52.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
View Download 0.342 a.118.14 FliG
View Download 0.231 a.100.1 6-phosphogluconate dehydrogenase C-terminal domain-like


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle