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View Structure Prediction Details

Protein: LHCA6_ARATH
Organism: Arabidopsis thaliana
Length: 270 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LHCA6_ARATH.

Description E-value Query
Range
Subject
Range
gi|3036948 - gi|3036948|dbj|BAA25392.1| light harvesting chlorophyll a/b-binding protein [Nicotiana sylvestris]
307.0 [0..9] [269..2]

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Predicted Domain #1
Region A:
Residues: [1-270]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAFAIASALT STLTLSTSRV QNPTQRRPHV ASTSSTGGRL MRERLVVVRA GKEVSSVCEP  60
   61 LPPDRPLWFP GSSPPEWLDG SLPGDFGFDP LGLGSDPDTL KWFAQAELIH SRWAMLAVTG 120
  121 IIIPECLERL GFIENFSWYD AGSREYFADS TTLFVAQMVL MGWAEGRRWA DLIKPGSVDI 180
  181 EPKYPHKVNP KPDVGYPGGL WFDFMMWGRG SPEPVMVLRT KEIKNGRLAM LAFLGFCFQA 240
  241 TYTSQDPIEN LMAHLADPGH CNVFSAFTSH 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 65.522879
Match: 2o012
Description: No description for 2o012 was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle