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View Structure Prediction Details

Protein: RPB9B_ARATH
Organism: Arabidopsis thaliana
Length: 114 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RPB9B_ARATH.

Description E-value Query
Range
Subject
Range
gi|125537020 - gi|125537020|gb|EAY83508.1| hypothetical protein OsI_38722 [Oryza sativa Indica Group]
gi|77556133, gi|... - gi|77556133|gb|ABA98929.1| DNA-directed RNA polymerase II 14.5 kDa polypeptide, putative, expressed ...
137.0 [0..1] [114..1]

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Predicted Domain #1
Region A:
Residues: [1-114]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTMKFCREC NNILYPKEDK EQSILLYACR NCDHQEAADN NCVYRNEVHH SVSEQTQILS  60
   61 DVASDPTLPR TKAVRCAKCQ HGEAVFFQAT ARGEEGMTLF FVCCNPNCSH RWRE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 24.522879
Match: 1i3qI
Description: RBP9 subunit of RNA polymerase II
Matching Structure (courtesy of the PDB):

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