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View Structure Prediction Details

Protein: gi|15810285, gi|...
Organism: Arabidopsis thaliana
Length: 411 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15810285, gi|....

Description E-value Query
Range
Subject
Range
gi|74005117 - gi|74005117|ref|XP_849107.1| PREDICTED: similar to basic leucine zipper and W2 domains 1 isoform 3 [...
483.0 [0..3] [406..37]

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Predicted Domain #1
Region A:
Residues: [1-76]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSKEKPTLG GTRIKTRKRN IAAPLDPAAF SDALVQIYLD NAGDLELVAR SLESSDLNFS  60
   61 RYGDIFFEVV FIGGRT

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [77-411]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QTGSVKSDEG ERHPYSIIDC EPKREAILPS VVYIQKILRR KAFLIKNLEN VTRRFLQSLE  60
   61 LFEENERKKL AIFTALAFSQ KLSGLPAETV FQPLLKDTLV AKGIVLNFVT DFFNEYLVEN 120
  121 SLDDLISILR RGKMDDKLLE FLPPTKRTTE SFAEHFTKAG LTALVEYNER KIFEVKLKEI 180
  181 KAVLTSQVTE EINVDEVTEM VKQQVKDAKL PETEVVHVIW DGIMNAVQWS GKNQQQNSNA 240
  241 VLRQVKTWAP LLNTLCSTGN MEMELMYKVQ MQCYEDAKLM KVFPEVVRSL YELDVLAEDT 300
  301 ILHWYRKGTN PKGRQTFVKG LEPFVNWLEE AEEEE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 56.30103
Match: 1ug3A
Description: C-terminal portion of human eIF4GI
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle