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View Structure Prediction Details

Protein: RIBD_ARATH
Organism: Arabidopsis thaliana
Length: 426 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RIBD_ARATH.

Description E-value Query
Range
Subject
Range
gi|21618159 - gi|21618159|gb|AAM67209.1| probable riboflavin biosynthesis related protein [Arabidopsis thaliana]
350.0 [0..1] [426..1]

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Predicted Domain #1
Region A:
Residues: [1-69]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQISCLPISI PSITPRTSIP LLPSLSSNPR RIFNLTSLQS PNHCFFKRLH KSQTGFSNPV  60
   61 LAAMRREED

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [70-426]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VEVDDSFYMR KCVELAKRAI GCTSPNPMVG CVIVKDGDIV GQGFHPKAGQ PHAEVFALRD  60
   61 AGELAENATA YVSLEPCNHY GRTPPCTEAL IKAKVRRVVI GMVDPNPIVF SSGISRLKDA 120
  121 GIDVTVSVEE ELCKKMNEGF IHRMLTGKPF LALRYSMSVN GCLLDKIGQG ASDSGGYYSK 180
  181 LLQEYDAIIL SSSLSDELSS ISSQEAINVS IQPIQIIVAS NAQQSHILAS SHTVEESGPK 240
  241 VVVFTAKESV AESGISSSGV ETVVLEKINL DSILDYCYNR GLCSVLLDLR GNVKDLEVLL 300
  301 RDGFEQKLLQ KVIIEVLPEW STKDERQIAS MKWLESKHVK DLQSKQLGGS VLLEGYF

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 87.69897
Match: 2g6vA
Description: No description for 2g6vA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle