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View Structure Prediction Details

Protein: gi|22136838, gi|...
Organism: Arabidopsis thaliana
Length: 644 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|22136838, gi|....

Description E-value Query
Range
Subject
Range
gi|30680143 - gi|30680143|ref|NP_850530.1| GPI transamidase component Gpi16 subunit family protein [Arabidopsis th...
797.0 [0..14] [644..14]
gi|109091798 - gi|109091798|ref|XP_001108481.1| PREDICTED: similar to phosphatidylinositol glycan, class T precurso...
788.0 [0..22] [605..21]
gi|84569994 - gi|84569994|gb|AAI10893.1| PIGT protein [Homo sapiens]
787.0 [0..22] [605..20]
gi|73992513 - gi|73992513|ref|XP_534436.2| PREDICTED: similar to phosphatidylinositol glycan, class T [Canis famil...
780.0 [0..4] [605..1]
gi|55729997|emb|... - hypothetical protein [Pongo pygmaeus]
gi|55729997 - gi|55729997|emb|CAH91724.1| hypothetical protein [Pongo abelii]
779.0 [0..24] [606..23]

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Predicted Domain #1
Region A:
Residues: [1-164]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASLLRSLIL LLIVQSFLVA IAFGSKEVEE FSEALLLKPL PDRKVLAHFH FENRAPPSNS  60
   61 HGRHHHLFPK AISQLVQKFR VKEMELSFTQ GRWNHEHWGG FDPLSSMNAK PVGVELWAVF 120
  121 DVPQSQVDTS WKNLTHALSG LFCASINFLE SSTSYAAPTW GFGP

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [165-245]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NSDKLRYGSL PREAVCTENL TPWLKLLPCR DKDGISALMN RPSVYRGFYH SQRLHLSTVE  60
   61 SGQEGLGSGI VLEQTLTVVL Q

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [246-343]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PETTSVESNM QPSWSLSSLF GRQVVGRCVL AKSSNVYLQL EGLLGYESKN VDTEIEAHQL  60
   61 WKNAEFELSL KPERVIRESC SFLFIFDIDK SSDSEPFD

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [344-644]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LGLTWKRPSK WSCQQAPLHS SRFLMGSGNE RGAIAILLKA TESQEKLSGR DLTNGQCTIK  60
   61 ANIFQIFPWY IKVYYHTLQI FVDQQQKTDS EVLKKINVSP STDKVSSGMM EMMLELPCEV 120
  121 KSVAISIEYD KGFLHIDEYP PDANQGFDIP SALISFPDHH ASLDFQEELS NSPLLSSLKE 180
  181 KSLVRSYTEV LLVPLTTPDF SMPYNVITIT CTIFALYFGS LLNVLRRRIG EEERFLKSQA 240
  241 GKKTGGLKQL LSRITAKIRG RPIEAPSSSE AESSVLSSKL ILKIILVAGA AAAWQYFSTD 300
  301 E

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle