YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|22327003, gi|...
Organism: Arabidopsis thaliana
Length: 397 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|22327003, gi|....

Description E-value Query
Range
Subject
Range
gi|9759371 - gi|9759371|dbj|BAB09830.1| unnamed protein product [Arabidopsis thaliana]
321.0 [0..1] [397..1]
gi|108705794 - gi|108705794|gb|ABF93589.1| LysM domain containing protein, expressed [Oryza sativa (japonica cultiv...
204.0 [0..53] [397..40]
gi|48727550 - gi|48727550|gb|AAT46074.1| lipoprotein [Pseudomonas chlororaphis]
gi|48727550|gb|A... - lipoprotein [Pseudomonas chlororaphis]
167.0 [0..3] [264..12]
gi|121607092, gi... - gi|121607092|ref|YP_994899.1| peptidase M23B [Verminephrobacter eiseniae EF01-2], gi|121551732|gb|AB...
162.0 [0..34] [262..26]
gi|70728588, gi|... - gi|70728588|ref|YP_258337.1| peptidase M23/LysM domain-containing protein [Pseudomonas fluorescens P...
161.0 [0..18] [264..2]

Back

Predicted Domain #1
Region A:
Residues: [1-131]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLTERGRRIS GFNGSFEFSN RKFRGYGFVD RSQGFHERSP SRSCSVSKIL RITPPTSSPP  60
   61 SSASTCAGYI EHRVSKFDTL AGIAIKYGVE VADITKLNGL VTDLQMFALE SLRIPLPGRH 120
  121 PPSPCLSNGS L

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 10.0
Match: 2djpA
Description: No description for 2djpA was found.

Predicted Domain #2
Region A:
Residues: [132-276]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NHGEDWSEQA SSSASNGNHQ DVFDSFQSLR LNHSEKKISP AMNSLQGYYG LKPKNRRASE  60
   61 GFGMAVYKNE ASQLQDNDQY LTPFPATSTP LSHHRKSRSL VDAVIAEVNQ SPNPSKAGGG 120
  121 EVNSTDKPMR RRQKSEADFS SRAPE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 6.045757
Match: 2gu1A
Description: No description for 2gu1A was found.

Predicted Domain #3
Region A:
Residues: [277-397]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LLLKEENRSS SGAFSAIAGK NLALRSKASS RANLSAETRH LNSIPINLMD APVGDSFSSV  60
   61 RKSVSASSLQ EPNCNSNGSS LWPTSKWTLK PELLTQVAMA SSIFDGLPKP LTGRRNKKAV 120
  121 D

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle