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View Structure Prediction Details

Protein: gi|21281225, gi|...
Organism: Arabidopsis thaliana
Length: 488 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|21281225, gi|....

Description E-value Query
Range
Subject
Range
gi|67668083, gi|... - gi|67668083|ref|ZP_00465278.1| General substrate transporter:Major facilitator superfamily [Burkhold...
230.0 [0..2] [418..1040]

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Predicted Domain #1
Region A:
Residues: [1-488]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKSETLTLVL VYLAGIMERA DESLLPGVYK EVGDALHVDP TALGTLTLFR SIVQSSCYPL  60
   61 AAYLSSRHNR AHVIALGAFL WATATFLVAV STTFFQVAVS RGLNGIGLAI VTPAIQSLVA 120
  121 DSTDDYNRGM AFGWLGFTSN IGSILGYVCS ILFASKSFNG VAGWRIAFLL VAVVSVIVGI 180
  181 LVRLFATDPH YSDRKITKHV KDKPFWSDIR DLLKEAKMVI KIPSFQIFVA QGVSGSFPWS 240
  241 ALAFAPLWLE LIGFSHKTTA VLVTLFTISC SLGGLFGGYM GDTLAKKFPN GGRIFLSQVS 300
  301 SGSAIPLAAI LLIGLPDDPS TAFSHGLVLV IMGLCISWNG AATNGPIFAE IVPERARTSI 360
  361 YALDRSFESI LASFAPPIVG MLAQNIYGYK PIPEGSTSSV KIDTDRANAA SLAKALYTSI 420
  421 GIPMVICCTI YSFLYCTYPR DRDRAKMQAL IESEMQQLNE EEDEIEVKCF GAEEHDEAYL 480
  481 LKQHQNES

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 33.522879
Match: 1pw4A
Description: Crystal Structure of the Glycerol-3-Phosphate Transporter from E.Coli
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle