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View Structure Prediction Details

Protein: gi|20465559, gi|...
Organism: Arabidopsis thaliana
Length: 447 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|20465559, gi|....

Description E-value Query
Range
Subject
Range
gi|21537312 - gi|21537312|gb|AAM61653.1| unknown [Arabidopsis thaliana]
280.0 [0..20] [447..2]

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Predicted Domain #1
Region A:
Residues: [1-201]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKSNFIHKF HHSAKPHTME DNEEEEESPT ELNTITGLSG FVVISPDKLS LKYTGVSQHG  60
   61 HDVGVVQANK PAPCKRFAYY FEIYVKDAGV KGRVSIGFTT NSFRIARHPG WELNTCGYHG 120
  121 EDGLIYLGKR QGEAFGPTYT TGDTVGGGIN YDSQEFFFTV NGTLVGTVSK YIKGPLFPTV 180
  181 AVHSQNEEVT VNFGQEKFAF D

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 26.154902
Match: 2v24A
Description: No description for 2v24A was found.

Predicted Domain #2
Region A:
Residues: [202-447]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FKGYESSERN KQQIAIEKIS IPSNMSLGLV KNYLLHYGYE ETHHALDLAT NSTLPPINGA  60
   61 QENGIDDTSY ALHERKILRQ LIRKGEIDAA LAKLRDSYPQ LVQNDKSEVC FLLHCQKFIE 120
  121 LVRIGALEEA VKYGRMELAK FIGLTTFQDI LEDCFALLVY ERPEESNVGY FLEETQREVV 180
  181 ADTVNAAILS TKPKGKNQSH SHLETLLRQL TACCLELRSL NDGQGEAFSL NRLLRTNNWK 240
  241 RTKKTT

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle