| Protein: | PUB14_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 632 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PUB14_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
377.0 | [0..1] | [632..1] |
|
|
346.0 | [0..18] | [629..4] |
|
Region A: Residues: [1-147] |
1 11 21 31 41 51
| | | | | |
1 MGLTNCCSHE ELMSRLVDSV KEISGFSSSR GFIGKIQGDL VRRITLLSPF FEELIDVNVE 60
61 LKKDQITGFE AMRIALDSSL ELFRSVNGGS KLFQLFDRDS LVEKFRDMTV EIEAALSQIP 120
121 YEKIEVSEEV REQVQLLHFQ FKRAKER
|
| Detection Method: |  |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.943 | N/A | N/A | a.24.9 | alpha-catenin/vinculin |
| View | Download | 0.941 | N/A | N/A | a.63.1 | Apolipophorin-III |
| View | Download | 0.924 | N/A | N/A | a.29.5 | alpha-ketoacid dehydrogenase kinase, N-terminal domain |
| View | Download | 0.915 | N/A | N/A | a.216.1 | Description not found. |
| View | Download | 0.893 | N/A | N/A | a.25.1 | Ferritin-like |
| View | Download | 0.857 | N/A | N/A | a.7.3 | Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain |
| View | Download | 0.857 | N/A | N/A | a.7.3 | Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain |
| View | Download | 0.855 | N/A | N/A | a.7.3 | Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain |
| View | Download | 0.846 | N/A | N/A | a.26.1 | 4-helical cytokines |
|
Region A: Residues: [148-239] |
1 11 21 31 41 51
| | | | | |
1 WEESDLQLSH DLAMAENVMD PDPIILKRLS QELQLTTIDE LKKESHAIHE YFLSYDGDPD 60
61 DCFERMSSLL KNLVDFVTME SSDPDPSTGS RI
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.917 | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
| View | Download | 0.917 | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
| View | Download | 0.889 | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
| View | Download | 0.889 | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
| View | Download | 0.855 | a.243.1 | Description not found. |
| View | Download | 0.831 | a.7.6 | Ribosomal protein S20 |
| View | Download | 0.830 | a.230.1 | Description not found. |
| View | Download | 0.747 | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.698 | a.112.1 | Description not found. |
|
Region A: Residues: [240-331] |
1 11 21 31 41 51
| | | | | |
1 VSRHRSPVIP EYFRCPISLE LMKDPVIVST GQTYERSSIQ KWLDAGHKTC PKSQETLLHA 60
61 GLTPNYVLKS LIALWCESNG IELPQNQGSC RT
|
| Detection Method: | |
| Confidence: | 10.09691 |
| Match: | 1t1hA |
| Description: | NMR solution structure of the U box domain from AtPUB14, an armadillo repeat containing protein from Arabidopsis thaliana |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [332-632] |
1 11 21 31 41 51
| | | | | |
1 TKIGGSSSSD CDRTFVLSLL EKLANGTTEQ QRAAAGELRL LAKRNVDNRV CIAEAGAIPL 60
61 LVELLSSPDP RTQEHSVTAL LNLSINEGNK GAIVDAGAIT DIVEVLKNGS MEARENAAAT 120
121 LFSLSVIDEN KVAIGAAGAI QALISLLEEG TRRGKKDAAT AIFNLCIYQG NKSRAVKGGI 180
181 VDPLTRLLKD AGGGMVDEAL AILAILSTNQ EGKTAIAEAE SIPVLVEIIR TGSPRNRENA 240
241 AAILWYLCIG NIERLNVARE VGADVALKEL TENGTDRAKR KAASLLELIQ QTEGVAVTTV 300
301 P
|
| Detection Method: | |
| Confidence: | 9.69897 |
| Match: | 1gcjA |
| Description: | Importin beta |
Matching Structure (courtesy of the PDB): |
|
