YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|17381206, gi\|...
Organism:	Arabidopsis thaliana
Length:	647 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|17381206, gi|....

Description	E-value	Query Range	Subject Range
gi\|186464325, gi... - gi\|23128981\|ref\|ZP_00110817.1\| COG2319: FOG: WD40 repeat [Nostoc punctiforme PCC 73102], gi\|18668187...	635.0	[0..1]	[640..1168]
YY46_NOSS1 - Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=... gi\|25530855 - pir\|\|AC2239 WD-40 repeat protein [imported] - Nostoc sp. (strain PCC 7120)	607.0	[0..2]	[646..904]
gi\|75701503, gi\|... - gi\|75907778\|ref\|YP_322074.1\| ribosome assembly protein 4 (RSA4) [Anabaena variabilis ATCC 29413], gi...	605.0	[0..1]	[640..1040]
gi\|48893630, gi\|... - gi\|71673807\|ref\|ZP_00671555.1\| TPR repeat:G-protein beta WD-40 repeat:YD repeat [Trichodesmium eryth...	594.0	[0..2]	[638..952]
gi\|148658115, gi... - gi\|148658115\|ref\|YP_001278320.1\| NB-ARC domain-containing protein [Roseiflexus sp. RS-1], gi\|1485702...	587.0	[0..2]	[644..861]

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Predicted Domain #1

Region A:
Residues: [1-80]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGTPGDEEDE DRFFDAPEVV SDDFGLHLWT STPESVSTRR RKFLQSMGLS FKKTATDDDS  60
   61 EDELEPSHTD SNVVSEVVNV

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [81-477]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SSGVKEIDLL VRNESTTSSG FDVSSVSSSD TDDQTLLARN DASSSTSTMP GGLSESSSSK  60
   61 SGSFGDFHNS PFSQRDDLLK KGAKSWLKKL GVLTHVLESM DCESVRTQLH QVARVQTHKK 120
  121 QFKELSSMCI DQEFSAHDGS ILAMKFSPDG KYIASAGEDC VVRVWSITEE ERTDTYEVAE 180
  181 VDSGVYFGMN QRSQIEPLKI NNEKTEKKSS FLRKSSDSTC VVLPPTIFSI SEKPLHEFKG 240
  241 HIGEILDLSW SEKGYLLSSS VDETVRLWRV GCDECLRTFT HNNFVTCVAF NPVDDNYFIS 300
  301 GSIDGKVRIW DVTRCRVVDY TDIRDIVTAV CYRPDAKGAV IGSMTGNCRF YHIFENQLQM 360
  361 DQEINVHGKK KVASKRISGL QYLPSDSDSD KVMVTSA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	6.522879
Match:	1k32A
Description:	Tricorn protease; Tricorn protease N-terminal domain; Tricorn protease domain 2
Matching Structure (courtesy of the PDB):

Predicted Domain #3

Region A:
Residues: [478-580]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DSQIRIICGE DVICKLKASS LRTTSASFIS DGKHIISTSE DSYINVWSYS QLPSKKPYSE  60
   61 TPKSIRSYEG FLSHNASVAI PWLRQGRRDG LSECITDLDM KIP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	6.154902
Match:	2oajA
Description:	No description for 2oajA was found.

Predicted Domain #4

Region A:
Residues: [581-647]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KVDCFSPMKG STTWPEEKLE DVAMSNRGKL KLLRSAWQPH LWGLVIVTAT WDGRIRVFHN  60
   61 YGLPIRV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	49.69897
Match:	1p22A
Description:	F-box/WD-repeat protein 1 (beta-TRCP1)
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits