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View Structure Prediction Details

Protein: RIBF2_ARATH
Organism: Arabidopsis thaliana
Length: 367 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RIBF2_ARATH.

Description E-value Query
Range
Subject
Range
gi|42573309 - gi|42573309|ref|NP_974751.1| riboflavin biosynthesis protein-related [Arabidopsis thaliana]
308.0 [0..1] [347..1]

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Predicted Domain #1
Region A:
Residues: [1-89]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLCGGSRVLQ HLSDHNHHNS IGLGLGFCGA KIVQLSSFFL RPSQAMAKSH HFSRKLRQRM  60
   61 ISSFGSHCRT SGEVPILHNC FSQREDDPE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 6.522879
Match: 1vm7A
Description: Crystal structure of Ribokinase (TM0960) from Thermotoga maritima at 2.15 A resolution
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [90-367]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LPVEGLSPVS GGIVALGKFD ALHIGHRELT IQASRIGAPY LLSFVGMAEV LGWEPRAPIV  60
   61 AKCDRQRVLT SWASYCGDRA PEEYEIEFAS VRHLTPRQFV EKLSKELRVC GVVAGENYRF 120
  121 GYKASGDASE LVRLCEECGI TACIINSVMD MKQGSAKRDS GDSKDRGQVS STRVRQALAA 180
  181 GDMRYVSELL GRAHRLILRV RTQDMPSERM ISVPRSSILN LPPGIGIYKA CLLLVGDESS 240
  241 VPCTVVVDTS NIHVETEEVR LCNLDWSQEF RLVSVEFG

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 52.69897
Match: 1mrzA
Description: Crystal structure of a flavin binding protein from Thermotoga Maritima, TM379
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle