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View Structure Prediction Details

Protein: DTX13_ARATH
Organism: Arabidopsis thaliana
Length: 482 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DTX13_ARATH.

Description E-value Query
Range
Subject
Range
gi|113548993, gi... - gi|115453843|ref|NP_001050522.1| Os03g0571900 [Oryza sativa (japonica cultivar-group)], gi|113548993...
333.0 [0..20] [481..630]

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Predicted Domain #1
Region A:
Residues: [1-241]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGDAESTSKT SLLLPVERVE NVTWRDLRDG LFTAELKRLI CFAAPMAAVV IAQFMLQIIS  60
   61 MVMVGHLGNL SLASASLASS FCNVTGFSFI VGLSCALDTL SGQAYGAKLY RKVGVQTYTA 120
  121 MFCLALVCLP LTLIWLNMET LLVFLGQDPS IAHEAGRYAA CLIPGLFAYA VLQPLTRYFQ 180
  181 NQSMITPLLI TSCFVFCLHV PLCWLLVYKS GLGNLGGALA LSFSNCLYTI ILGSLMCFSS 240
  241 A

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 31.251812
Match: PF01554.9
Description: No description for PF01554.9 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [242-482]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 CSETRAPLSM EIFDGIGEFF RYALPSAAMI CLEWWSYELI ILLSGLLPNP QLETSVLSVC  60
   61 LQTTATVYSI HLAIAAAAST RISNELGAGN SRAANIVVYA AMSLAVVEIL ILSTSLLVGR 120
  121 NVFGHVFSSD KETIDYVAKM APLVSISLIL DGLQGVLSGI ARGCGWQHIG AYINLGAFYL 180
  181 WGIPIAASLA FWIHLKGVGL WIGIQAGAVL QTLLLTLVTG CTNWESQADK ARNRMALAYG 240
  241 T

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 28.124939
Match: PF01554.9
Description: No description for PF01554.9 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle