YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|17529232, gi|...
Organism: Arabidopsis thaliana
Length: 950 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

No multiple sequence alignment data found for gi|17529232, gi|....

Predicted Domain #1
Region A:
Residues: [1-160]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVGATLFHRR KHSWPTEEFI SRSTLQLLDF DSAAPPPHAW RRRLNCHANI LKEFTITFRE  60
   61 AIKMVRLGIR LWSYVREEAS HGRKAPIDPF TKENCKPSAS QGVPLGGMGS GSISRGFRGE 120
  121 FKQWQITPGT CDPSPMMSNQ FSIFISRDGG HKKYASVLSP 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [161-238]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GQHGSLGKSR DKGLSSWGWN LNGQHSTYHA LFPRAWTIYD GEPDPELKIS CRQISPFIPN  60
   61 NYRDSSLPAA VFVYTLVN

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [239-950]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TGKERAKVSL LFTWANSMGG TSHMSGGHVN EPFIGEDGVS GVLLHHKTGK GNPPVTFAIA  60
   61 ASETQNVNVT VLPCFGLSED SSFTAKDMWD TMEQDGKFDQ ENFNSGPSTP SLAGDTICAA 120
  121 VSASAWVEAH GKCTVSFALS WSSPKVKFSK GSTYDRRYTK FYGTSPRAAL DLVHDALTNY 180
  181 KRWEEDIEAW QNPILRDERL PEWYKFTLFN ELYFLVAGGT VWIDSSSLNA NGNSQHQQSG 240
  241 LGNSDGKVGG LDINDQRNDL GNGNSVGVKS NDEVSAIHNR NGLFVDTPHV DDGDDVGRFL 300
  301 YLEGVEYVMW CTYDVHFYAS YALLMLFPKI ELNIQRDFAK AVLSEDGRKV KFLAEGNVGI 360
  361 RKVRGAVPHD LGMHDPWNEM NAYNIHDTSR WKDLNPKFVL QVYRDFAATG DYQFGIDVWP 420
  421 AVRAAMEYME QFDRDNDDLI ENDGFPDQTY DTWTVHGVSA YCGCLWLAAL QAAAAMALQI 480
  481 GDKFFAELCK NKFLNAKAAL ETKLWNGSYF NYDSGSSSNS KSIQTDQLAG QWYAASSGLP 540
  541 PLFEESKIRS TMQKIFDFNV MKTKGGKMGA VNGMHPDGKV DDTCMQSREI WTGVTYAAAA 600
  601 TMILSGMEEQ GFTTAEGIFT AGWSEEGFGY WFQTPEGWTM DGHYRSLIYM RPLAIWGMQW 660
  661 ALSLPKAILD APQINMMDRV HLSPRSRRFS NNFKVVKHKA KCFGNSALSC SC

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 73.154902
Match: 1v7vA
Description: Crystal structure of Vibrio proteolyticus chitobiose phosphorylase
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle