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View Structure Prediction Details

Protein: CSLE1_ARATH
Organism: Arabidopsis thaliana
Length: 729 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CSLE1_ARATH.

Description E-value Query
Range
Subject
Range
gi|162461937, gi... - gi|38532104|gb|AAR23312.1| cellulose synthase catalytic subunit 12 [Zea mays], gi|162461937|ref|NP_0...
595.0 [0..6] [729..237]

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Predicted Domain #1
Region A:
Residues: [1-87]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVNKDDRIRP VHEADGEPLF ETRRRTGRVI AYRFFSASVF VCICLIWFYR IGEIGDNRTV  60
   61 LDRLIWFVMF IVEIWFGLYW VVTQSSR

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [88-197]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 WNPVWRFPFS DRLSRRYGSD LPRLDVFVCT ADPVIEPPLL VVNTVLSVTA LDYPPEKLAV  60
   61 YLSDDGGSEL TFYALTEAAE FAKTWVPFCK KFNVEPTSPA AYLSSKANCL 

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 2.08
Match: 2ffuA
Description: Crystal Structure of Human ppGalNAcT-2 complexed with UDP and EA2
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [198-421]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DSAAEEVAKL YREMAARIET AARLGRIPEE ARVKYGDGFS QWDADATRRN HGTILQVLVD  60
   61 GREGNTIAIP TLVYLSREKR PQHHHNFKAG AMNALLRVSS KITCGKIILN LDCDMYANNS 120
  121 KSTRDALCIL LDEKEGKEIA FVQFPQCFDN VTRNDLYGSM MRVGIDVEFL GLDGNGGPLY 180
  181 IGTGCFHRRD VICGRKYGEE EEEEESERIH ENLEPEMIKA LASC

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 6.69897
Match: 1h7lA
Description: Spore coat polysaccharide biosynthesis protein SpsA
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 1.3567084433464 bayes_pls_golite062009
transferase activity 1.04375515050786 bayes_pls_golite062009

Predicted Domain #4
Region A:
Residues: [422-628]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TYEENTQWGK EMGVKYGCPV EDVITGLTIQ CRGWKSAYLN PEKQAFLGVA PTNLHQMLVQ  60
   61 QRRWSEGDFQ IMLSKYSPVW YGKGKISLGL ILGYCCYCLW APSSLPVLIY SVLTSLCLFK 120
  121 GIPLFPKVSS SWFIPFGYVT VAATAYSLAE FLWCGGTFRG WWNEQRMWLY RRTSSFLFGF 180
  181 MDTIKKLLGV SESAFVITAK VAEEEAA

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [629-729]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ERYKEEVMEF GVESPMFLVL GTLGMLNLFC FAAAVARLVS GDGGDLKTMG MQFVITGVLV  60
   61 VINWPLYKGM LLRQDKGKMP MSVTVKSVVL ALSACTCLAF L

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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Created and Maintained by: Michael Riffle