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View Structure Prediction Details

Protein: ELIP2_ARATH
Organism: Arabidopsis thaliana
Length: 193 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ELIP2_ARATH.

Description E-value Query
Range
Subject
Range
gi|3036949 - gi|3036949|dbj|BAA25393.1| light harvesting chlorophyll a/b-binding protein [Nicotiana sylvestris]
192.0 [0..1] [193..1]

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Predicted Domain #1
Region A:
Residues: [1-193]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATASFNMQS VFAAPSGVLT TRNIRNTNQL FFKRIAPVGV RCMAQGDPIK EDPSVPSTST  60
   61 SATPPQMPQS PPPPVSKPKV STKFGDLLAF SGPAPERING RLAMVGFVAA IAMELSKGEN 120
  121 VFAQISDGGV GWFLGTTALL TLASMVPLFK GIRAEAKSKG FMTSDAELWN GRFAMLGLVA 180
  181 LAFTEYVTGG TLV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 40.30103
Match: 1rwtA
Description: Crystal Structure of Spinach Major Light-harvesting complex at 2.72 Angstrom Resolution
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle