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View Structure Prediction Details

Protein: gi|15231324, gi|...
Organism: Arabidopsis thaliana
Length: 216 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15231324, gi|....

Description E-value Query
Range
Subject
Range
SINA3_ARATH - E3 ubiquitin-protein ligase SINAT3 OS=Arabidopsis thaliana GN=SINAT3 PE=2 SV=1
307.0 [0..5] [215..105]

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Predicted Domain #1
Region A:
Residues: [1-216]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEPRINDLQV ESRVHELLDF PVHTNQISSA IYECPNDHIE NPKKKPYNCP HSGAKCDVTG  60
   61 DIQRLLLHLR NDHNVEMSDG RSFSHRYVHH DPKHLHHATW MLTLLDCCGR KFCLYFEAFH 120
  121 LRKTPMYMAF MQFMGDEEEA MSFSYSLQVG GNGRKLTWQG VPRSIRDSHK TVRDSQDGLI 180
  181 ITRKLALFFS TDNNTTDKEL KLKVSGRVWR EQPVSI

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 70.522879
Match: 2a25A
Description: Crystal structure of Siah1 SBD bound to the peptide EKPAAVVAPITTG from SIP
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle