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View Structure Prediction Details

Protein: KIN13_ARATH
Organism: Arabidopsis thaliana
Length: 794 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for KIN13_ARATH.

Description E-value Query
Range
Subject
Range
gi|11994617 - gi|11994617|dbj|BAB02754.1| unnamed protein product [Arabidopsis thaliana]
402.0 [0..1] [794..21]

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Predicted Domain #1
Region A:
Residues: [1-115]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGGQMQQNNA AAATALYDGA LPTNDAGDAV MARWLQSAGL QHLASPVAST GNDQRHLPNL  60
   61 LMQGYGAQTA EEKQRLFQLM RNLNFNGEST SESYTPTAHT SAAMPSSEGF FSPEF

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.01
Match: 2f3nA
Description: Crystal Structure of the native Shank SAM domain.
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 3.19486995724826 bayes_pls_golite062009
protein binding 3.01479451996893 bayes_pls_golite062009
transcription regulator activity 1.4352733243042 bayes_pls_golite062009
chromatin binding 1.40125726306854 bayes_pls_golite062009
DNA binding 0.995851697740616 bayes_pls_golite062009
nucleic acid binding 0.897498965407176 bayes_pls_golite062009
transcription factor activity 0.642910879091782 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [116-525]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RGDFGAGLLD LHAMDDTELL SEHVITEPFE PSPFMPSVNK EFEEDYNLAA NRQQRQQTEA  60
   61 EPLGLLPKSD KENNSVAKIK VVVRKRPLNK KETAKKEEDV VTVSDNSLTV HEPRVKVDLT 120
  121 AYVEKHEFCF DAVLDEDVSN DEVYRATIEP IIPIIFQRTK ATCFAYGQTG SGKTFTMKPL 180
  181 PIRAVEDLMR LLRQPVYSNQ RFKLWLSYFE IYGGKLFDLL SERKKLCMRE DGRQQVCIVG 240
  241 LQEYEVSDVQ IVKDFIEKGN AERSTGSTGA NEESSRSHAI LQLVVKKHVE VKDTRRRNND 300
  301 SNELPGKVVG KISFIDLAGS ERGADTTDND RQTRIEGAEI NKSLLALKEC IRALDNDQLH 360
  361 IPFRGSKLTE VLRDSFVGNS RTVMISCISP NAGSCEHTLN TLRYADRVKS 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 72.221849
Match: 2gryA
Description: No description for 2gryA was found.

Predicted Domain #3
Region A:
Residues: [526-794]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LSKSGNSKKD QTANSMPPVN KDPLLGPNDV EDVFEPPQEV NVPETRRRVV EKDSNSSTSG  60
   61 IDFRQPTNYR EESGIPSFSM DKGRSEPNSS FAGSTSQRNN ISSYPQETSD REEKVKKVSP 120
  121 PRGKGLREEK PDRPQNWSKR DVSSSDIPTL TNFRQNASET ASRQYETASR QYETDPSLDE 180
  181 NLDALLEEEE ALIAAHRKEI EDTMEIVREE MKLLAEVDQP GSMIENYVTQ LSFVLSRKAA 240
  241 GLVSLQARLA RFQHRLKEQE ILSRKRVPR

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 11.154902
Match: 1i84S
Description: Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle