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View Structure Prediction Details

Protein: PTR16_ARATH
Organism: Arabidopsis thaliana
Length: 591 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PTR16_ARATH.

Description E-value Query
Range
Subject
Range
PTR1_ARATH - Protein NRT1/ PTR FAMILY 8.1 OS=Arabidopsis thaliana GN=NPF8.1 PE=1 SV=1
348.0 [0..19] [578..2]

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Predicted Domain #1
Region A:
Residues: [1-61]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEINKQSNK WEQEEVSNEN NWELAEEESV DWRGRPSNPN KHGGMRAALF VLGLQAFEIM  60
   61 G

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 8.522879
Match: 1pw4A
Description: Crystal Structure of the Glycerol-3-Phosphate Transporter from E.Coli
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [62-415]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IAAVGNNLIT YVINEMHFPL SKAANIVTNF VGTIFIFALL GGYLSDAFLG SFWTIIIFGF  60
   61 VELSGFILLS VQAHLPQLKP PKCNPLIDQT CEEAKGFKAM IFFMALYLVA LGSGCVKPNM 120
  121 IAHGADQFSQ SHPKQSKRLS SYFNAAYFAF SMGELIALTL LVWVQTHSGM DIGFGVSAAA 180
  181 MTMGIISLVS GTMYFRNKRP RRSIFTPIAH VIVAAILKRK LASPSDPRML HGDHHVANDV 240
  241 VPSSTLPHTP RFRFLDKACI KIQDTNTKES PWRLCTVTQV EQVKTLISLV PIFASTIVFN 300
  301 TILAQLQTFS VQQGSSMNTR LSNSFHIPPA SLQAIPYIML IFLVPLYDSF LVPF

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 10.221849
Match: 2gfpA
Description: No description for 2gfpA was found.

Predicted Domain #3
Region A:
Residues: [416-591]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ARKLTGHNSG IPPLTRIGIG LFLSTFSMVS AAMLEKKRRD SSVLDGRILS IFWITPQFLI  60
   61 FGISEMFTAV GLIEFFYKQS AKGMESFLMA LTYCSYSFGF YFSSVLVSVV NKITSTSVDS 120
  121 KGWLGENDLN KDRLDLFYWL LAVLSLLNFL SYLFWSRWNI KSSRRNNTNV VGDENI

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.48
Match: 2v8nA
Description: No description for 2v8nA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle