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View Structure Prediction Details

Protein: COPDA_ARATH
Organism: Arabidopsis thaliana
Length: 701 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for COPDA_ARATH.

Description E-value Query
Range
Subject
Range
gi|28805052, gi|... - gi|28896844|ref|NP_796449.1| oligopeptidase A [Vibrio parahaemolyticus RIMD 2210633], gi|28805052|db...
gi|28805052 - gi|28805052|dbj|BAC58333.1| oligopeptidase A [Vibrio parahaemolyticus RIMD 2210633]
680.0 [0..8] [698..1]

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Predicted Domain #1
Region A:
Residues: [1-701]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASEDTLSSN PLLQNFDFPP FDSVDAHHVR PGIRALLQQL EAELEQLEKA VEPSWPKLVE  60
   61 PLEKIIDRLS VVWGMINHLK AVKDTPELRA AIEEVQPEKV KFQLRLGQSK PIYNAFKAIR 120
  121 ESPDWNSLSE ARQRLVEAQI KEAVLSGIAL EDDKREEFNK IEQELEKLSH KFSENVLDAT 180
  181 KKFEKLITDK KEIEGLPPSA LGLFAQAAVS KGHETATADT GPWLITLDAP SYLPVMQHAK 240
  241 NRALREEVYR AYLSRASSGD LDNTAIIDQI LKLRLEKAKL LGYRNYAEVS MATKMATVEK 300
  301 ADELLEKLRS ASWDPAVQDI EDLKSFAKNQ GAAEADSLTH WDITFWSERL RESKYDINEE 360
  361 ELRPYFSLPK VMDALFGLAK TLFGIDVVPA DGVAPVWNSD VRFYCVKDSS GNPTAYFYFD 420
  421 PYSRPSEKRD GAWMDEVFSR SRVMAQKGSS VRLPVAQMVC NQTPPVGDKP SLMTFREVET 480
  481 VFHEFGHALQ HMLTKEDEGL VAGIRNIEWD AVELPSQFME NWCYHRDTLM SIAKHYQTGE 540
  541 TLPENVYKKL LAARTFRAGS LSLRQLKFAT VDLELHTKYM PGGAETIYEV DQRVSIKTQV 600
  601 IPPLPEDRFL CSFSHIFAGG YAAGYYSYKW AEVLSADAFS AFEDAGLDDI KAVKETGQRF 660
  661 RNTILALGGG KAPLKVFVEF RGREPSPEPL LRHNGLLAAS A

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 148.0
Match: 2o36A
Description: No description for 2o36A was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle