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View Structure Prediction Details

Protein: gi|18399149, gi|...
Organism: Arabidopsis thaliana
Length: 446 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|18399149, gi|....

Description E-value Query
Range
Subject
Range
gi|25518167, gi|... - pir||F86465 F12G12.3 protein - Arabidopsis thaliana, gi|10086461|gb|AAG12521.1|AC015446_2 Putative ...
407.0 [0..1] [446..1]
gi|16550495 - gi|16550495|dbj|BAB70990.1| unnamed protein product [Homo sapiens]
378.0 [0..20] [440..6]
gi|114641137 - gi|114641137|ref|XP_001148378.1| PREDICTED: pseudouridylate synthase 3 [Pan troglodytes]
377.0 [0..20] [440..6]
gi|109109191 - gi|109109191|ref|XP_001111887.1| PREDICTED: pseudouridylate synthase 3 [Macaca mulatta]
377.0 [0..16] [440..1]
gi|57085889 - gi|57085889|ref|XP_536533.1| PREDICTED: similar to tRNA pseudouridine synthase 3 (tRNA-uridine isome...
374.0 [0..20] [440..6]
PUS3_BOVIN - tRNA pseudouridine(38/39) synthase OS=Bos taurus GN=PUS3 PE=2 SV=1
374.0 [0..21] [440..7]
gi|165971639, gi... - gi|165971639|gb|AAI58694.1| Pseudouridylate synthase 3 [Rattus norvegicus], gi|157822367|ref|NP_0011...
373.0 [0..16] [440..1]

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Predicted Domain #1
Region A:
Residues: [1-88]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTISDAKSDP GGDDRDSEIA KETELVFLRN RVKELEVENA KLLSQVSSCQ CQQMEVKHDR  60
   61 SLSDSSSLVR RRRVRKGDKN SIPSHLIS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [89-356]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KRYVALKIMY FGKRFYGFSA EAQMEPSIES EVFKALERTR LLVGDKKDSC YSRCGRTDKG  60
   61 VSSTGQVIAL FLRSRLKSPP GDSKAQVNGR TGERPEYDYV RVLNRALPDD IRVIGWSPAP 120
  121 IDFHARFSCY AREYKYFFWR QNLNLSAMDF AGKKFIGEHD FRNFCKMDVA NVHCYTRRVT 180
  181 FFEVSPCQNS HEGDQLCTFT MRGSAFLWHQ IRCMVAVLFM IGQGVESVDV IDTLLDTKKT 240
  241 PRKPQYLLAS EIPLVLRTCE FENVDFIC

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 75.69897
Match: 2nqpA
Description: No description for 2nqpA was found.

Predicted Domain #3
Region A:
Residues: [357-446]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SPGAAESLRS HFKNESLTYQ LESVIYQEAL RNCLPLSNNV STEESSCNGV EKKKKRAEHV  60
   61 PLLSRPTEPS YEERTAKLKP RKEETLACVV 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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Created and Maintained by: Michael Riffle