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View Structure Prediction Details

Protein: AMT13_ARATH
Organism: Arabidopsis thaliana
Length: 498 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for AMT13_ARATH.

Description E-value Query
Range
Subject
Range
AT13_ARATH, AMT1... - (Q9SQH9) Ammonium transporter 1, member 3 (AtAMT1;3), Ammonium transporter 1 member 3 (AtAMT1;3) - A...
477.0 [0..1] [493..1]

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Predicted Domain #1
Region A:
Residues: [1-498]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGAITCSAA DLATLLGPNA TAAADYICGQ LGTVNNKFTD AAFAIDNTYL LFSAYLVFAM  60
   61 QLGFAMLCAG SVRAKNTMNI MLTNVLDAAA GGLFYYLFGY AFAFGGSSEG FIGRHNFALR 120
  121 DFPTPTADYS FFLYQWAFAI AAAGITSGSI AERTQFVAYL IYSSFLTGFV YPVVSHWFWS 180
  181 PDGWASPFRS ADDRLFSTGA IDFAGSGVVH MVGGIAGLWG ALIEGPRRGR FEKGGRAIAL 240
  241 RGHSASLVVL GTFLLWFGWY GFNPGSFTKI LVPYNSGSNY GQWSGIGRTA VNTTLSGCTA 300
  301 ALTTLFGKRL LSGHWNVTDV CNGLLGGFAA ITAGCSVVEP WAAIVCGFMA SVVLIGCNKL 360
  361 AELVQYDDPL EAAQLHGGCG AWGLIFVGLF AKEKYLNEVY GATPGRPYGL FMGGGGKLLG 420
  421 AQLVQILVIV GWVSATMGTL FFILKRLNLL RISEQHEMQG MDMTRHGGFA YIYHDNDDES 480
  481 HRVDPGSPFP RSATPPRV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 95.0
Match: 1xqeA
Description: The mechanism of ammonia transport based on the crystal structure of AmtB of E. coli.
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle