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View Structure Prediction Details

Protein: AATP3_ARATH
Organism: Arabidopsis thaliana
Length: 495 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for AATP3_ARATH.

Description E-value Query
Range
Subject
Range
gi|56758882 - gi|56758882|gb|AAW27581.1| SJCHGC09453 protein [Schistosoma japonicum]
329.0 [0..2] [489..271]

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Predicted Domain #1
Region A:
Residues: [1-495]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFPSSDFSFS PSSLFSAYAS LTGFLMLFRS MLHDFVPEKL RSYFSSLLDR FFTPKSKYLT  60
   61 VIIDENFGLN RNQVFDAAEM YLRSKIGPET ERLRVGKIPK QKHFTISIER GEEILDTFEE 120
  121 SEVKWSYVQS ENEKGDKVKR YYELTFEKKL RDKVLNSYLT HVVAESEEIK RNLRVVKLYS 180
  181 RDVYASDDDD GMAGGNWGCI NLEHPSTFDT LAMDPNAKKK IIDDLERFLK RKEFYKRVGK 240
  241 AWKRGYLLYG PPGTGKSSLI AAMANYLKFD VFDLELSSIY DNGELKRVLL STTNRSILVI 300
  301 EDIDCNAEVR DREAENQEDE QIKGKVTLSG ILNFIDGLWS SFGDERIIVF TTNHKERLDP 360
  361 ALLRPGRMDV HINMSYCTGL GFRTLVSNYL GLDGLNHPLC EEIEALVDST EVTPAELAEE 420
  421 LMQDDDTDVV LRGVISFVEK RKVERSKTKK EVSICKATDD DEKQNGSLGC VKKKKKGGKQ 480
  481 KGKGKGKGKA KTYLI

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 83.69897
Match: 1oz4A
Description: VCP/p97
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle