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View Structure Prediction Details

Protein: SRX_ARATH
Organism: Arabidopsis thaliana
Length: 125 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SRX_ARATH.

Description E-value Query
Range
Subject
Range
gi|67087715, gi|... - gi|67153582|ref|ZP_00415327.1| ParB-like partition protein [Azotobacter vinelandii AvOP], gi|6708771...
gi|67153582, gi|... - gi|67153582|ref|ZP_00415327.1| ParB-like partition protein [Azotobacter vinelandii AvOP], ref|ZP_000...
122.0 [0..1] [124..1]
gi|115588934, gi... - gi|53726896|ref|ZP_00140398.2| COG1475: Predicted transcriptional regulators [Pseudomonas aeruginosa...
119.0 [0..1] [124..1]
gi|88796689, gi|... - gi|88796689|ref|ZP_01112346.1| ParB family protein [Alteromonas macleodii 'Deep ecotype'], gi|887719...
118.0 [0..1] [124..1]
gi|109900601, gi... - gi|76793207|ref|ZP_00775697.1| ParB-like partition protein [Pseudoalteromonas atlantica T6c], gi|765...
118.0 [0..1] [124..1]
gi|150961051, gi... - gi|94417271|ref|ZP_01297090.1| hypothetical protein PaerP_01001070 [Pseudomonas aeruginosa PA7], gi|...
118.0 [0..1] [124..1]
gi|218894665, gi... - gi|218894665|ref|YP_002443535.1| chromosome partitioning protein Spo0J [Pseudomonas aeruginosa LESB5...
gi|107104663 - gi|107104663|ref|ZP_01368581.1| hypothetical protein PaerPA_01005742 [Pseudomonas aeruginosa PACS2]
gi|11347575 - pir||A82950 chromosome partitioning protein Spo0J PA5562 [imported] - Pseudomonas aeruginosa (strain...
gi|15600755, gi|... - gi|9951903|gb|AAG08947.1|AE004968_1 chromosome partitioning protein Spo0J [Pseudomonas aeruginosa PA...
118.0 [0..1] [124..1]
gi|84324801, gi|... - gi|84324801|ref|ZP_00972855.1| COG1475: Predicted transcriptional regulators [Pseudomonas aeruginosa...
118.0 [0..1] [124..1]
gi|68347805, gi|... - gi|70733506|ref|YP_263281.1| chromosome partitioning protein ParB [Pseudomonas fluorescens Pf-5], gi...
117.0 [0..1] [124..1]
gi|95113429 - gi|95113429|emb|CAK18157.1| Chromosomal partitioning protein ParB [Pseudomonas entomophila L48]
gi|95113429, gi|... - gi|95113429|emb|CAK18157.1| Chromosomal partitioning protein ParB [Pseudomonas entomophila L48], gi|...
117.0 [0..1] [124..1]
gi|63259060, gi|... - gi|66048353|ref|YP_238194.1| ParB-like partition protein [Pseudomonas syringae pv. syringae B728a], ...
117.0 [0..1] [124..1]

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Predicted Domain #1
Region A:
Residues: [1-125]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANLMMRLPI SLRSFSVSAS SSNGSPPVIG GSSGGVGPMI VELPLEKIRR PLMRTRSNDQ  60
   61 NKVKELMDSI RQIGLQVPID VIEVDGTYYG FSGCHRYEAH QKLGLPTIRC KIRKGTKETL 120
  121 RHHLR

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 21.09691
Match: 1vz0A
Description: Chromosome segregation protein Spo0J from Thermus thermophilus
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle