YRC Public Data Repository - Protein Structure Prediction

Protein:	PURU1_ARATH
Organism:	Arabidopsis thaliana
Length:	323 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PURU1_ARATH.

Description	E-value	Query Range	Subject Range
gi\|15236046 - gi\|15236046\|ref\|NP_193467.1\| formyltetrahydrofolate deformylase, putative [Arabidopsis thaliana]	306.0	[0..1]	[323..1]
gi\|68346410, gi\|... - gi\|70732111\|ref\|YP_261867.1\| formyltetrahydrofolate deformylase [Pseudomonas fluorescens Pf-5], gi\|6...	296.0	[0..35]	[323..11]
gi\|27354232, gi\|... - gi\|27381066\|ref\|NP_772595.1\| formyltetrahydrofolate deformylase [Bradyrhizobium japonicum USDA 110],...	295.0	[0..38]	[323..4]
gi\|89257492 - gi\|89257492\|gb\|ABD64983.1\| formyltetrahydrofolate deformylase, putative [Brassica oleracea]	294.0	[0..3]	[323..10]
gi\|77460657, gi\|... - gi\|77460657\|ref\|YP_350164.1\| formyltetrahydrofolate deformylase [Pseudomonas fluorescens Pf0-1], gi\|...	293.0	[0..37]	[323..1]
gi\|218773632, gi... - gi\|218893404\|ref\|YP_002442273.1\| formyltetrahydrofolate deformylase [Pseudomonas aeruginosa LESB58],... gi\|116052348, gi... - gi\|46164795\|ref\|ZP_00137792.2\| COG0788: Formyltetrahydrofolate hydrolase [Pseudomonas aeruginosa UCB... gi\|15599510, gi\|... - gi\|9950538\|gb\|AAG07702.1\|AE004848_1 formyltetrahydrofolate deformylase [Pseudomonas aeruginosa PAO1]... gi\|11348559 - pir\|\|C83105 formyltetrahydrofolate deformylase PA4314 [imported] - Pseudomonas aeruginosa (strain PA... gi\|107100103 - gi\|107100103\|ref\|ZP_01364021.1\| hypothetical protein PaerPA_01001124 [Pseudomonas aeruginosa PACS2] gi\|254239018, gi... - gi\|84316845\|ref\|ZP_00965304.1\| COG0788: Formyltetrahydrofolate hydrolase [Pseudomonas aeruginosa C37... gi\|126198254, gi... - gi\|84323156\|ref\|ZP_00971233.1\| COG0788: Formyltetrahydrofolate hydrolase [Pseudomonas aeruginosa 219...	293.0	[0..37]	[323..1]
gi\|94413979, gi\|... - gi\|94413979\|ref\|ZP_01293848.1\| hypothetical protein PaerP_01004249 [Pseudomonas aeruginosa PA7], gi\|...	292.0	[0..37]	[323..1]
gi\|49083322 - gi\|49083322\|gb\|AAT51001.1\| PA4314 [synthetic construct]	292.0	[0..37]	[323..1]
gi\|83723946, gi\|... - gi\|83749369\|ref\|ZP_00946364.1\| Formyltetrahydrofolate deformylase [Ralstonia solanacearum UW551], gi...	292.0	[0..40]	[323..33]
gi\|117927364, gi... - gi\|88932266\|ref\|ZP_01137958.1\| Formyltetrahydrofolate deformylase [Acidothermus cellulolyticus 11B],...	291.0	[0..37]	[323..1]

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Predicted Domain #1

Region A:
Residues: [1-123]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIRRITERAS GFAKNIPILK SSRFHGESLD SSVSPVLIPG VHVFHCQDAV GIVAKLSDCI  60
   61 AAKGGNILGY DVFVPENNNV FYSRSEFIFD PVKWPRSQVD EDFQTIAQRY GALNSVVRVP 120
  121 SID

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	16.0
Match:	1zpvA
Description:	ACT domain protein from Streptococcus pneumoniae
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [124-323]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PKYKIALLLS KQDHCLVEML HKWQDGKLPV DITCVISNHE RASNTHVMRF LERHGIPYHY  60
   61 VSTTKENKRE DDILELVKDT DFLVLARYMQ ILSGNFLKGY GKDVINIHHG LLPSFKGGYP 120
  121 AKQAFDAGVK LIGATSHFVT EELDSGPIIE QMVESVSHRD NLRSFVQKSE DLEKKCLTRA 180
  181 IKSYCELRVL PYGTNKTVVF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	48.221849
Match:	1mejB
Description:	Glycinamide ribonucleotide transformylase, GART
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits