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View Structure Prediction Details

Protein: gi|28827368, gi|...
Organism: Arabidopsis thaliana
Length: 116 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|28827368, gi|....

Description E-value Query
Range
Subject
Range
gi|7012719, gi|2... - gi|7012719|gb|AAF35184.1|AF195863_1 lipid transfer protein precursor [Gossypium hirsutum], gi|208427...
100.0 [0..1] [114..1]

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Predicted Domain #1
Region A:
Residues: [1-116]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKIGVVLVLL TVFVVVMSST SVSAQSDEDE CLKETGQMQL NCFPYLTDNR IHTPSFACCS  60
   61 EVYTVGKTYV DCFCQFINNG GPSFGIVVSQ KLLDLPELCG VYGACGNGKN FKNTSL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 15.522879
Match: 1bwoA
Description: Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1)
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle