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View Structure Prediction Details

Protein: ULT1_ARATH
Organism: Arabidopsis thaliana
Length: 237 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ULT1_ARATH.

Description E-value Query
Range
Subject
Range
gi|7486204, gi|7... - pir||T09035 hypothetical protein F26K10.70 - Arabidopsis thaliana, gi|7269673|emb|CAB79621.1| hypoth...
425.0 [0..1] [237..1]
gi|115440319, gi... - gi|53792223|dbj|BAD52856.1| unknown protein [Oryza sativa Japonica Group], gi|53791679|dbj|BAD53274....
gi|218189170 - gi|218189170|gb|EEC71597.1| hypothetical protein OsI_03981 [Oryza sativa Indica Group]
378.0 [0..14] [236..12]

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Predicted Domain #1
Region A:
Residues: [1-122]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANNEGEMQC GSMLFKQEEL QEMSGVNVGG DYVEVMCGCT SHRYGDAVAR LRVFPTGDLE  60
   61 ITCECTPGCD EDKLTPAAFE KHSGRETARK WKNNVWVIIG GEKVPLSKTV LLKYYNESSK 120
  121 KC

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 0.951
Match: 1h5pA
Description: Nuclear autoantigen Sp100b
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [123-237]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SRSNRSQGAK VCHRDEFVGC NDCGKERRFR LRSRDECRLH HNAMGDPNWK CSDFPYDKIT  60
   61 CEEEEERGSR KVYRGCTRSP SCKGCTSCVC FGCELCRFSE CTCQTCVDFT SNVKA

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle