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View Structure Prediction Details

Protein: gi|6526975, gi|2...
Organism: Arabidopsis thaliana
Length: 823 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|6526975, gi|2....

Description E-value Query
Range
Subject
Range
gi|68533113 - gi|68533113|dbj|BAE06111.1| KIF1A variant protein [Homo sapiens]
357.0 [0..3] [706..11]

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Predicted Domain #1
Region A:
Residues: [1-361]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKICVAVRV RPPAPENGAS LWKVEDNRIS LHKSLDTPIT TASHAFDHVF DESSTNASVY  60
   61 ELLTKDIIHA AVEGFNGTAF AYGQTSSGKT FTMTGSETDP GIIRRSVRDV FERIHMISDR 120
  121 EFLIRVSYME IYNEEINDLL AVENQRLQIH EHLERGVFVA GLKEEIVSDA EQILKLIDSG 180
  181 EVNRHFGETN MNVHSSRSHT IFRMVIESRG KDNSSSDAIR VSVLNLVDLA GSERIAKTGA 240
  241 GGVRLQEGKY INKSLMILGN VINKLSDSTK LRAHIPYRDS KLTRILQPAL GGNAKTCIIC 300
  301 TIAPEEHHIE ESKGTLQFAS RAKRITNCAQ VNEILTDAAL LKRQKLEIEE LRMKLQGSHA 360
  361 E

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 76.522879
Match: 1t5cA
Description: Crystal structure of the motor domain of human kinetochore protein CENP-E
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [362-823]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VLEQEILNLS NQMLKYELEC ERLKTQLEEE KRKQKEQENC IKEQQMKIEN LNNFVTNSDF  60
   61 KRNQSEDFII SRKTPDGLCN VNDTSDVPGT PCFKSASRSF VVARSNNYSG LSDFSPMVHS 120
  121 LGDVADEDTW MKLNKGFVAD LDQIQFTPAV KCQPTPLSIA TTECPRENHS EVEDLKSRIQ 180
  181 LLTNENDSLQ VKFNEQVLLS NNLMQEMSEL KQETLTVKEI PNRLSESVAN CKDVYKDVIV 240
  241 TMKSLITDKE SPTANLLLGT TEITTSLLAT LETQFSMIMD GQKTGSSIDH PLSDHWETLR 300
  301 VNLKNTTTLL LSDAQAKDEF LNSHNKGQET AALEEKKLKS ELIIIKERYN ELEKELCLDK 360
  361 QLLEASRESH EKLIKEVQFL KEERDSLDRK ISQSTQRLRV IASDKENALK DLNVEVKRRK 420
  421 DMEEEIKHIS IAFATRHKSF VSFHSEIKSK MQKLTTQNSK AP

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 12.522879
Match: 1i84S
Description: Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle