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View Structure Prediction Details

Protein: CLPC2_ARATH
Organism: Arabidopsis thaliana
Length: 952 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

No multiple sequence alignment data found for CLPC2_ARATH.

Predicted Domain #1
Region A:
Residues: [1-105] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAWSIALLTP PFFGPGRHVQ AKEYREPRGC VMKMSSLKAP VLRIQATEYR EPRGRVKMMS  60
   61 SLQAPLLTIQ SFSGLRAPSA LDYLGRPSPG FLVKYKLAKS SGREK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 85.221849
Match: 1oz4A
Description: VCP/p97
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [106-952] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ASRCVPKAMF ERFTEKAIKV IMLSQEEARR LGHNFVGTEQ ILLGLIGEGT GIAAKVLKSM  60
   61 GINLKDSRVE VEKIIGRGSG FVAVEIPFTP RAKRVLELSL EEARQLGHNY IGSEHLLLGL 120
  121 LREGEGVAAR VLENLGADPS NIRTQVIRMV GENNEVTASV GGGSSGNSKM PTLEEYGTNL 180
  181 TKLAEEGKLD PVVGRQPQIE RVVQILARRT KNNPCLIGEP GVGKTAIAEG LAQRIASGDV 240
  241 PETIEGKTVI TLDMGLLVAG TKYRGEFEER LKKLMEEIRQ SDEIILFIDE VHTLIGAGAA 300
  301 EGAIDAANIL KPALARGELQ CIGATTIDEY RKHIEKDPAL ERRFQPVKVP EPTVEEAIQI 360
  361 LQGLRERYEI HHKLRYTDEA LVAAAQLSHQ YISDRFLPDK AIDLIDEAGS RVRLRHAQLP 420
  421 EEARELEKQL RQITKEKNEA VRSQDFEMAG SHRDREIELK AEIANVLSRG KEVAKAENEA 480
  481 EEGGPTVTES DIQHIVATWT GIPVEKVSSD ESSRLLQMEQ TLHTRVIGQD EAVKAISRAI 540
  541 RRARVGLKNP NRPIASFIFS GPTGVGKSEL AKALAAYYFG SEEAMIRLDM SEFMERHTVS 600
  601 KLIGSPPGYV GYTEGGQLTE AVRRRPYTLV LFDEIEKAHP DVFNMMLQIL EDGRLTDSKG 660
  661 RTVDFKNTLL IMTSNVGSSV IEKGGRRIGF DLDHDEKDSS YNRIKSLVTE ELKQYFRPEF 720
  721 LNRLDEMIVF RQLTKLEVKE IADIMLKEVV ARLEVKEIEL QVTERFKERV VDEGFDPSYG 780
  781 ARPLRRAIMR LLEDSMAEKM LSRDIKEGDS VIVDVDAEGS VVVLSGTTGR VGGFAAEEAM 840
  841 EDPIPIL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 155.0
Match: 1qvrA
Description: Crystal Structure Analysis of ClpB
Matching Structure (courtesy of the PDB):
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle