YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|229606211, gi...
Organism:	Vibrio cholerae MJ-1236
Length:	66 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|229606211, gi....

Description	E-value	Query Range	Subject Range
gi\|37197440, gi\|... - gi\|37678699\|ref\|NP_933308.1\| transcriptional regulator [Vibrio vulnificus YJ016], gi\|37197440\|dbj\|BA...	104.0	[0..1]	[66..3]
gi\|94317786 - gi\|94317786\|gb\|ABF15056.1\| putative DNA binding protein [Salmonella enterica subsp. enterica serovar... gi\|194401335, gi... - gi\|194442672\|ref\|YP_002043732.1\| phage transcriptional regulator, AlpA [Salmonella enterica subsp. e...	90.0	[0..2]	[59..24]
gi\|195957610 - gi\|195957610\|gb\|ACG59719.1\| putative transcriptional regulator [Escherichia coli] gi\|240119365, gi... - gi\|240119365\|dbj\|BAH79228.1\| predicted transcriptional regulator [Escherichia coli O157:H7], gi\|1959... gi\|218355396, gi... - gi\|218547855\|ref\|YP_002381646.1\| conserved hypothetical protein of bacteriophage origin, putative CO... gi\|192955764, gi... - gi\|193070910\|ref\|ZP_03051841.1\| transcriptional regulator, AlpA family [Escherichia coli E110019], g... gi\|124528022, gi... - gi\|124528022\|ref\|ZP_01699375.1\| phage transcriptional regulator, AlpA [Escherichia coli B], gi\|12450... gi\|1589630 - gi\|1589630\|prf\|\|2211375A vis gene gi\|93825 - pir\|\|G42465 hypothetical protein 88 - phage phi-R73 gi\|190909146, gi... - gi\|191170338\|ref\|ZP_03031891.1\| transcriptional regulator, AlpA family [Escherichia coli F11], gi\|19... gi\|81247888, gi\|... - gi\|82546477\|ref\|YP_410424.1\| hypothetical protein SBO_4169 [Shigella boydii Sb227], gi\|81247888\|gb\|A... gi\|170520674, gi... - gi\|170682956\|ref\|YP_001745969.1\| AlpA family transcriptional regulator [Escherichia coli SMS-3-5], g... gi\|170019098, gi... - gi\|170019098\|ref\|YP_001724052.1\| phage transcriptional regulator, AlpA [Escherichia coli ATCC 8739],... gi\|168784922, gi... - gi\|189374800\|gb\|EDU93216.1\| transcriptional regulator, AlpA family [Escherichia coli O157:H7 str. EC... gi\|254038865, gi... - gi\|254038865\|ref\|ZP_04872917.1\| transcriptional regulator [Escherichia sp. 1_1_43], gi\|226838830\|gb\|...	90.0	[0..2]	[59..26]
gi\|188494710, gi... - gi\|75513567\|ref\|ZP_00735958.1\| COG3311: Predicted transcriptional regulator [Escherichia coli 53638]...	89.0	[0..2]	[60..10]
gi\|75242552 - gi\|75242552\|ref\|ZP_00726296.1\| COG3311: Predicted transcriptional regulator [Escherichia coli F11] gi\|75234204 - gi\|75234204\|ref\|ZP_00718597.1\| COG3311: Predicted transcriptional regulator [Escherichia coli E11001...	89.0	[0..2]	[59..10]
gi\|29138653, gi\|... - gi\|29143020\|ref\|NP_806362.1\| hypothetical protein t2651 [Salmonella enterica subsp. enterica serovar...	89.0	[0..2]	[59..10]
gi\|34101957, gi\|... - gi\|34496103\|ref\|NP_900318.1\| prophage regulatory protein [Chromobacterium violaceum ATCC 12472], gi\|...	89.0	[0..1]	[60..13]
gi\|16763289 - gi\|16763289\|ref\|NP_458906.1\| phage DNA binding protein [Salmonella enterica subsp. enterica serovar ... gi\|213648801 - gi\|213648801\|ref\|ZP_03378854.1\| phage DNA binding protein [Salmonella enterica subsp. enterica serov... gi\|213613126 - gi\|213613126\|ref\|ZP_03370952.1\| phage DNA binding protein [Salmonella enterica subsp. enterica serov... gi\|29144768, gi\|... - gi\|29144768\|ref\|NP_808110.1\| phage DNA binding protein [Salmonella enterica subsp. enterica serovar ... gi\|25301738, gi\|... - gi\|25301738\|pir\|\|AI1062 phage DNA binding protein [imported] - Salmonella enterica subsp. enterica s...	89.0	[0..2]	[57..26]
Y9K_BPP4 - Uncharacterized protein ORF88 OS=Enterobacteria phage P4 PE=4 SV=1 gi\|76834 - gi\|76834\|pir\|\|JW0029 hypothetical 9.7K protein - satellite phage P4	89.0	[0..2]	[59..26]
gi\|75904 - gi\|75904\|pir\|\|Q1BPP4 hypothetical protein ORF1 - satellite phage P4	89.0	[0..2]	[61..26]

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Predicted Domain #1

Region A:
Residues: [1-66]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRFLRLKDVM SLTGLGRSTI YKFMADETDF PKSVPLGGRA VAWVESEIEE WMESRLSMRD  60
   61 NQESFQ

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	3.31
Match:	1z4hA
Description:	The response regulator TorI belongs to a new family of atypical excisionase
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits