YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|254690002
Organism:	Brucella abortus bv. 6 str. 870
Length:	89 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|254690002.

Description	E-value	Query Range	Subject Range
RL27_XANP2 - 50S ribosomal protein L27 OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) GN=rpmA PE=3 SV...	153.0	[0..1]	[89..1]
gi\|114771044, gi... - gi\|114771044\|ref\|ZP_01448484.1\| 50S ribosomal protein L27 [alpha proteobacterium HTCC2255], gi\|11454... gi\|114771044 - gi\|114771044\|ref\|ZP_01448484.1\| 50S ribosomal protein L27 [alpha proteobacterium HTCC2255]	150.0	[0..1]	[89..1]
gi\|114706783, gi... - gi\|114706783\|ref\|ZP_01439683.1\| 50S ribosomal protein L27 [Fulvimarina pelagi HTCC2506], gi\|11453773...	150.0	[0..1]	[89..1]
RL27_CHESB - 50S ribosomal protein L27 OS=Chelativorans sp. (strain BNC1) GN=rpmA PE=3 SV=1	149.0	[0..1]	[89..1]
RL27_BARQU - 50S ribosomal protein L27 OS=Bartonella quintana (strain Toulouse) GN=rpmA PE=3 SV=1 RL27_BARQU - 50S ribosomal protein L27 OS=Bartonella quintana GN=rpmA PE=3 SV=1	148.0	[0..1]	[89..1]
RL27_BRAJA - 50S ribosomal protein L27 OS=Bradyrhizobium japonicum GN=rpmA PE=3 SV=1 RL27_BRADU - 50S ribosomal protein L27 OS=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 1479...	148.0	[0..1]	[89..1]
RL27_BARHE - 50S ribosomal protein L27 OS=Bartonella henselae (strain ATCC 49882 / DSM 28221 / Houston 1) GN=rpmA... RL27_BARHE - 50S ribosomal protein L27 OS=Bartonella henselae GN=rpmA PE=3 SV=1	148.0	[0..1]	[89..1]
RL27_RHOP2 - 50S ribosomal protein L27 OS=Rhodopseudomonas palustris (strain HaA2) GN=rpmA PE=3 SV=1	148.0	[0..1]	[89..1]
RL27_RHOPS - 50S ribosomal protein L27 OS=Rhodopseudomonas palustris (strain BisB5) GN=rpmA PE=3 SV=1	147.0	[0..1]	[89..1]
RL27_BARBK - 50S ribosomal protein L27 OS=Bartonella bacilliformis (strain ATCC 35685 / KC583) GN=rpmA PE=3 SV=1	146.0	[0..1]	[88..1]

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Predicted Domain #1

Region A:
Residues: [1-89]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAHKKAGGSS RNGRDSESKR LGVKKFGGEA VLAGNIIVRQ RGTKWHPGAN VGLGKDHTIF  60
   61 ATVNGSVSFR TKANGRTYVS VNPIAEAAE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	31.30103
Match:	1v8qA
Description:	Crystal structure of ribosomal protein L27 from Thermus thermophilus HB8
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits