YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|225617260, gi...
Organism:	Brucella ceti str. Cudo
Length:	249 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|225617260, gi....

Description	E-value	Query Range	Subject Range
ATE_CHESB - Putative arginyl-tRNA--protein transferase OS=Chelativorans sp. (strain BNC1) GN=ate PE=3 SV=1	366.0	[0..3]	[248..4]
ATE_BRUAB - Putative arginyl-tRNA--protein transferase OS=Brucella abortus biovar 1 (strain 9-941) GN=ate PE=3 S... ATE_BRUA2 - Putative arginyl-tRNA--protein transferase OS=Brucella abortus (strain 2308) GN=ate PE=3 SV=1 ATE_BRUAB - Putative arginyl-tRNA--protein transferase OS=Brucella abortus GN=ate PE=3 SV=1 gi\|237790033, gi... - gi\|237815196\|ref\|ZP_04594194.1\| arginyl-tRNA--protein transferase [Brucella abortus str. 2308 A], gi... gi\|254689019 - gi\|254689019\|ref\|ZP_05152273.1\| arginyl-tRNA-protein transferase [Brucella abortus bv. 6 str. 870] gi\|254730050 - gi\|254730050\|ref\|ZP_05188628.1\| arginyl-tRNA-protein transferase [Brucella abortus bv. 4 str. 292] gi\|254693502 - gi\|254693502\|ref\|ZP_05155330.1\| arginyl-tRNA-protein transferase [Brucella abortus bv. 3 str. Tulya] gi\|254697154 - gi\|254697154\|ref\|ZP_05158982.1\| arginyl-tRNA-protein transferase [Brucella abortus bv. 2 str. 86/8/5...	365.0	[0..1]	[249..1]
ATE_BURL3 - Putative arginyl-tRNA--protein transferase OS=Burkholderia lata (strain ATCC 17760 / LMG 22485 / NCI... ATE_BURS3 - Putative arginyl-tRNA--protein transferase OS=Burkholderia sp. (strain 383) GN=ate PE=3 SV=1	363.0	[0..1]	[248..1]
ATE_BURVG - Putative arginyl-tRNA--protein transferase OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=...	362.0	[0..1]	[248..1]
ATE_BURCC - Putative arginyl-tRNA--protein transferase OS=Burkholderia cenocepacia (strain MC0-3) GN=ate PE=3 SV... ATE_BURCA - Putative arginyl-tRNA--protein transferase OS=Burkholderia cenocepacia (strain AU 1054) GN=ate PE=3 ... gi\|194556518, gi... - gi\|84357661\|ref\|ZP_00982474.1\| COG2935: Putative arginyl-tRNA:protein arginylyltransferase [Burkhold... ATE_BURCH - Putative arginyl-tRNA--protein transferase OS=Burkholderia cenocepacia (strain HI2424) GN=ate PE=3 S...	362.0	[0..1]	[248..1]
ATE_RHILO - Putative arginyl-tRNA--protein transferase OS=Rhizobium loti (strain MAFF303099) GN=ate PE=3 SV=1 ATE_RHILO - Putative arginyl-tRNA--protein transferase OS=Rhizobium loti GN=ate PE=3 SV=1	360.0	[0..1]	[247..1]
ATE_BURCM - Putative arginyl-tRNA--protein transferase OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN...	360.0	[0..1]	[248..1]
gi\|194563476, gi... - gi\|84361656\|ref\|ZP_00986311.1\| COG2935: Putative arginyl-tRNA:protein arginylyltransferase [Burkhold...	360.0	[0..1]	[248..1]
ATE_BURPS - Putative arginyl-tRNA--protein transferase OS=Burkholderia pseudomallei GN=ate PE=3 SV=1 ATE_BURPS - Putative arginyl-tRNA--protein transferase OS=Burkholderia pseudomallei (strain K96243) GN=ate PE=3 ... gi\|254297761, gi... - gi\|254297761\|ref\|ZP_04965214.1\| putative arginine-tRNA-protein transferase [Burkholderia pseudomalle... gi\|194506448, gi... - gi\|254179929\|ref\|ZP_04886528.1\| putative arginine-tRNA-protein transferase [Burkholderia pseudomalle... gi\|237812105, gi... - gi\|237812105\|ref\|YP_002896556.1\| arginyltransferase [Burkholderia pseudomallei MSHR346], gi\|23750565... gi\|167738746 - gi\|167738746\|ref\|ZP_02411520.1\| arginyl-tRNA-protein transferase [Burkholderia pseudomallei 14] gi\|167911099 - gi\|167911099\|ref\|ZP_02498190.1\| arginyl-tRNA-protein transferase [Burkholderia pseudomallei 112] gi\|167815970 - gi\|167815970\|ref\|ZP_02447650.1\| arginyl-tRNA-protein transferase [Burkholderia pseudomallei 91]	355.0	[0..1]	[248..1]
ATE_BURM9 - Putative arginyl-tRNA--protein transferase OS=Burkholderia mallei (strain NCTC 10229) GN=ate PE=3 SV... ATE_BURMS - Putative arginyl-tRNA--protein transferase OS=Burkholderia mallei (strain SAVP1) GN=ate PE=3 SV=1 ATE_BURM7 - Putative arginyl-tRNA--protein transferase OS=Burkholderia mallei (strain NCTC 10247) GN=ate PE=3 SV... ATE_BURP6 - Putative arginyl-tRNA--protein transferase OS=Burkholderia pseudomallei (strain 668) GN=ate PE=3 SV=... ATE_BURMA - Putative arginyl-tRNA--protein transferase OS=Burkholderia mallei GN=ate PE=3 SV=1 ATE_BURP0 - Putative arginyl-tRNA--protein transferase OS=Burkholderia pseudomallei (strain 1106a) GN=ate PE=3 S... gi\|217423521, gi... - gi\|217423521\|ref\|ZP_03455022.1\| putative arginine-tRNA-protein transferase [Burkholderia pseudomalle... gi\|169654962, gi... - gi\|254198221\|ref\|ZP_04904643.1\| putative arginine-tRNA-protein transferase [Burkholderia pseudomalle... gi\|157936345, gi... - gi\|254188666\|ref\|ZP_04895177.1\| putative arginine-tRNA-protein transferase [Burkholderia pseudomalle... gi\|226196317, gi... - gi\|226196317\|ref\|ZP_03791899.1\| putative arginine-tRNA-protein transferase [Burkholderia pseudomalle... ATE_BURMA - Putative arginyl-tRNA--protein transferase OS=Burkholderia mallei (strain ATCC 23344) GN=ate PE=3 SV... ATE_BURP1 - Putative arginyl-tRNA--protein transferase OS=Burkholderia pseudomallei (strain 1710b) GN=ate PE=3 S... gi\|238520961, gi... - gi\|238563297\|ref\|ZP_00439082.2\| putative arginine-tRNA-protein transferase [Burkholderia mallei GB8 ... gi\|254178171, gi... - gi\|254178171\|ref\|ZP_04884826.1\| putative arginine-tRNA-protein transferase [Burkholderia mallei ATCC... gi\|167919119 - gi\|167919119\|ref\|ZP_02506210.1\| arginyl-tRNA-protein transferase [Burkholderia pseudomallei BCC215] gi\|167902856 - gi\|167902856\|ref\|ZP_02490061.1\| arginyl-tRNA-protein transferase [Burkholderia pseudomallei NCTC 131... gi\|167894455 - gi\|167894455\|ref\|ZP_02481857.1\| arginyl-tRNA-protein transferase [Burkholderia pseudomallei 7894] gi\|167845885 - gi\|167845885\|ref\|ZP_02471393.1\| arginyl-tRNA-protein transferase [Burkholderia pseudomallei B7210] gi\|167824341 - gi\|167824341\|ref\|ZP_02455812.1\| arginyl-tRNA-protein transferase [Burkholderia pseudomallei 9] gi\|167003923, gi... - gi\|243060615\|gb\|EES42801.1\| putative arginine-tRNA-protein transferase [Burkholderia mallei PRL-20],... gi\|254260240, gi... - gi\|254260240\|ref\|ZP_04951294.1\| putative arginine-tRNA-protein transferase [Burkholderia pseudomalle... gi\|242140534, gi... - gi\|242317295\|ref\|ZP_04816311.1\| putative arginine-tRNA-protein transferase [Burkholderia pseudomalle... gi\|148027718, gi... - gi\|254358591\|ref\|ZP_04974864.1\| putative arginine-tRNA-protein transferase [Burkholderia mallei 2002... gi\|254206193, gi... - gi\|254206193\|ref\|ZP_04912545.1\| putative arginine-tRNA-protein transferase [Burkholderia mallei JHU]... gi\|147749461, gi... - gi\|254199865\|ref\|ZP_04906231.1\| putative arginine-tRNA-protein transferase [Burkholderia mallei FMH]... gi\|134246246, gi... - gi\|134282208\|ref\|ZP_01768913.1\| putative arginine-tRNA-protein transferase [Burkholderia pseudomalle...	355.0	[0..1]	[248..1]

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Predicted Domain #1

Region A:
Residues: [1-79]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTHQPQQSPQ FFLTAPSPCP YLEGQQERKV FTHLVGDKAN EINDLLTQGG FRRSQNIAYR  60
   61 PACEVCRACI SVRILAGEF

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	25.070581
Match:	PF04376.4
Description:	No description for PF04376.4 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [80-249]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EMTRNMRRVW SQNRDLIGRV HKAQPSTEQY ALFRDYLDAR HRSGGMSDMT VLDYAMMIED  60
   61 THVNTQIIEY RRRGPDSFMS AKGDGELIAV ALTDVMADGL SMVYSFFSPH MQERSLGTYM 120
  121 ILDHIERARA AGLPHVYLGY WVEGSRKMQY KIRFTPQEHL GPRGWQRFEG

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.23
Match:	1ne9A
Description:	Crystal Structure of Weissella viridescens FemX at 1.7 Ang Resolution
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
transferase activity	2.55875279009494	bayes_pls_golite062009
catalytic activity	1.823104805379	bayes_pls_golite062009
N-acyltransferase activity	1.01612175108957	bayes_pls_golite062009
transferase activity, transferring acyl groups	0.891365267309195	bayes_pls_golite062009
N-acetyltransferase activity	0.742763631251083	bayes_pls_golite062009
transferase activity, transferring acyl groups other than amino-acyl groups	0.702304130974859	bayes_pls_golite062009
acyltransferase activity	0.692187306039071	bayes_pls_golite062009
histone acetyltransferase activity	0.306849355414592	bayes_pls_golite062009
lysine N-acetyltransferase activity	0.306849355414592	bayes_pls_golite062009
acetyltransferase activity	0.260019561204287	bayes_pls_golite062009
hydrolase activity	0.170204792281041	bayes_pls_golite062009
peptidase activity	0.0747105464856999	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: