YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|242378213, gi...
Organism:	Escherichia coli BL21
Length:	158 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|242378213, gi....

Description	E-value	Query Range	Subject Range
gi\|191171364, gi... - gi\|191171364\|ref\|ZP_03032913.1\| polyketide cyclase/dehydrase family protein [Escherichia coli F11], ... gi\|117624839, gi... - gi\|117624839\|ref\|YP_853752.1\| hypothetical protein APECO1_3916 [Escherichia coli APEC O1], gi\|115513... gi\|237706793, gi... - gi\|237706793\|ref\|ZP_04537274.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22689... gi\|110344371, gi... - gi\|110642779\|ref\|YP_670509.1\| hypothetical protein ECP_2619 [Escherichia coli 536], gi\|110344371\|gb\|... gi\|227834825, gi... - gi\|227888185\|ref\|ZP_04005990.1\| possibe oligoketide cyclase/lipid transport protein [Escherichia col... gi\|91211954, gi\|... - gi\|91211954\|ref\|YP_541940.1\| hypothetical protein UTI89_C2953 [Escherichia coli UTI89], gi\|91073528\|... PAST_ECOL6 - Persistence and stress-resistance toxin PasT OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 ... gi\|215487968, gi... - gi\|215487968\|ref\|YP_002330399.1\| hypothetical protein E2348C_2907 [Escherichia coli O127:H6 str. E23... gi\|218366307, gi... - gi\|218559538\|ref\|YP_002392451.1\| hypothetical protein ECS88_2805 [Escherichia coli S88], gi\|21836630...	170.0	[0..1]	[158..1]
gi\|15803139, gi\|... - gi\|15803139\|ref\|NP_289171.1\| hypothetical protein Z3912 [Escherichia coli O157:H7 EDL933], gi\|125170... gi\|15832735, gi\|... - gi\|15832735\|ref\|NP_311508.1\| hypothetical protein ECs3481 [Escherichia coli O157:H7], gi\|13362952\|db... gi\|218555198, gi... - gi\|218555198\|ref\|YP_002388111.1\| hypothetical protein ECIAI1_2740 [Escherichia coli IAI1], gi\|218361... gi\|218352974, gi... - gi\|218696242\|ref\|YP_002403909.1\| hypothetical protein EC55989_2907 [Escherichia coli 55989], gi\|2183... gi\|208814184, gi... - gi\|208814184\|ref\|ZP_03255513.1\| polyketide cyclase/dehydrase family protein [Escherichia coli O157:H... gi\|208821713, gi... - gi\|208821713\|ref\|ZP_03262033.1\| polyketide cyclase/dehydrase family protein [Escherichia coli O157:H... gi\|209396556, gi... - gi\|209396556\|ref\|YP_002272088.1\| polyketide cyclase/dehydrase family protein [Escherichia coli O157:... gi\|217327876, gi... - gi\|217327876\|ref\|ZP_03443959.1\| polyketide cyclase/dehydrase family protein [Escherichia coli O157:H... gi\|51773740 - gi\|51773740\|emb\|CAH23265.1\| hypothetical protein [Escherichia coli] gi\|209762460, gi... - pir\|\|E85908 hypothetical protein Z3912 [imported] - Escherichia coli (strain O157:H7, substrain EDL... gi\|194414071, gi... - gi\|194427838\|ref\|ZP_03060384.1\| polyketide cyclase/dehydrase family protein [Escherichia coli B171],... gi\|73856654, gi\|... - gi\|74313177\|ref\|YP_311596.1\| hypothetical protein SSON_2744 [Shigella sonnei Ss046], gi\|73856654\|gb\|... gi\|194433023, gi... - gi\|194433023\|ref\|ZP_03065306.1\| polyketide cyclase/dehydrase family protein [Shigella dysenteriae 10... gi\|195939670 - gi\|195939670\|ref\|ZP_03085052.1\| hypothetical protein EscherichcoliO157_25245 [Escherichia coli O157:... gi\|208808479, gi... - gi\|208808479\|ref\|ZP_03250816.1\| polyketide cyclase/dehydrase family protein [Escherichia coli O157:H... gi\|189377151, gi... - gi\|189377151\|gb\|EDU95567.1\| polyketide cyclase/dehydrase family protein [Escherichia coli O157:H7 st... gi\|191167063, gi... - gi\|191167063\|ref\|ZP_03028884.1\| polyketide cyclase/dehydrase family protein [Escherichia coli B7A], ... gi\|81242125, gi\|... - gi\|82777977\|ref\|YP_404326.1\| hypothetical protein SDY_2792 [Shigella dysenteriae Sd197], gi\|81242125... gi\|192926406, gi... - gi\|193065992\|ref\|ZP_03047051.1\| polyketide cyclase/dehydrase family protein [Escherichia coli E22], ... gi\|82545162, gi\|... - gi\|82545162\|ref\|YP_409109.1\| hypothetical protein SBO_2754 [Shigella boydii Sb227], gi\|81246573\|gb\|A... gi\|15832735, gi\|... - gi\|15832735\|ref\|NP_311508.1\| hypothetical protein ECs3481 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|192955414, gi... - gi\|193071261\|ref\|ZP_03052181.1\| polyketide cyclase/dehydrase family protein [Escherichia coli E11001... gi\|168768706, gi... - gi\|189362021\|gb\|EDU80440.1\| polyketide cyclase/dehydrase family protein [Escherichia coli O157:H7 st... gi\|187769571, gi... - gi\|187769571\|gb\|EDU33415.1\| polyketide cyclase/dehydrase family protein [Escherichia coli O157:H7 st... gi\|189003569, gi... - gi\|189003569\|gb\|EDU72555.1\| polyketide cyclase/dehydrase family protein [Escherichia coli O157:H7 st... gi\|189370851, gi... - gi\|189370851\|gb\|EDU89267.1\| polyketide cyclase/dehydrase family protein [Escherichia coli O157:H7 st... gi\|254794564, gi... - gi\|254794564\|ref\|YP_003079401.1\| hypothetical protein ECSP_3563 [Escherichia coli O157:H7 str. TW143... gi\|168752579, gi... - gi\|188013616\|gb\|EDU51738.1\| polyketide cyclase/dehydrase family protein [Escherichia coli O157:H7 st... gi\|189357236, gi... - gi\|189357236\|gb\|EDU75655.1\| polyketide cyclase/dehydrase family protein [Escherichia coli O157:H7 st... gi\|168762411, gi... - gi\|189367230\|gb\|EDU85646.1\| polyketide cyclase/dehydrase family protein [Escherichia coli O157:H7 st...	169.0	[0..1]	[158..1]
gi\|194447318, gi... - gi\|194447318\|ref\|YP_002046690.1\| hypothetical protein SeHA_C2902 [Salmonella enterica subsp. enteric... gi\|194404757, gi... - gi\|194446094\|ref\|YP_002041948.1\| polyketide cyclase/dehydrase family protein [Salmonella enterica su... gi\|205360491, gi... - gi\|205360491\|ref\|ZP_03224639.1\| polyketide cyclase/dehydrase family protein [Salmonella enterica sub... gi\|205340651, gi... - gi\|205360172\|ref\|ZP_03224541.1\| polyketide cyclase/dehydrase family protein [Salmonella enterica sub... gi\|205336454, gi... - gi\|205359387\|ref\|ZP_03224285.1\| polyketide cyclase/dehydrase family protein [Salmonella enterica sub... gi\|62128890, gi\|... - gi\|62181257\|ref\|YP_217674.1\| hypothetical protein SC2687 [Salmonella enterica subsp. enterica serova... gi\|205358806, gi... - gi\|205358806\|ref\|ZP_03224145.1\| polyketide cyclase/dehydrase family protein [Salmonella enterica sub... gi\|224584538, gi... - gi\|224584538\|ref\|YP_002638336.1\| hypothetical protein SPC_2797 [Salmonella enterica subsp. enterica ... gi\|206709837, gi... - gi\|207858034\|ref\|YP_002244685.1\| hypothetical protein SEN2607 [Salmonella enterica subsp. enterica s... gi\|197263935, gi... - gi\|197263935\|ref\|ZP_03164009.1\| polyketide cyclase/dehydrase family protein [Salmonella enterica sub... lcl\|NC_016856.1_... - [gene=yfjG] [protein=hypothetical protein] [protein_id=YP_005238812.1] [location=complement(2879775.... gi\|197248003, gi... - gi\|197248003\|ref\|YP_002147622.1\| polyketide cyclase/dehydrase family protein [Salmonella enterica su... gi\|195873600, gi... - gi\|195873600\|ref\|ZP_03080069.1\| polyketide cyclase/dehydrase family protein [Salmonella enterica sub... gi\|194470421, gi... - gi\|194470421\|ref\|ZP_03076405.1\| polyketide cyclase/dehydrase family protein [Salmonella enterica sub... gi\|29143010, gi\|... - gi\|29143010\|ref\|NP_806352.1\| hypothetical protein t2641 [Salmonella enterica subsp. enterica serovar... gi\|205357815, gi... - gi\|205357815\|ref\|ZP_03223847.1\| polyketide cyclase/dehydrase family protein [Salmonella enterica sub... gi\|16761539 - gi\|16761539\|ref\|NP_457156.1\| hypothetical protein STY2873 [Salmonella enterica subsp. enterica serov... gi\|205353723, gi... - gi\|205353723\|ref\|YP_002227524.1\| hypothetical protein SG2664 [Salmonella enterica subsp. enterica se... gi\|16503840, gi\|... - gi\|25348181\|pir\|\|AB0835 conserved hypothetical protein STY2873 [imported] - Salmonella enterica subs... gi\|200388148, gi... - gi\|200388148\|ref\|ZP_03214760.1\| polyketide cyclase/dehydrase family protein [Salmonella enterica sub... gi\|16766002, gi\|... - gi\|16766002\|ref\|NP_461617.1\| hypothetical protein STM2687 [Salmonella typhimurium LT2], gi\|16421234\|... gi\|197939657, gi... - gi\|198245141\|ref\|YP_002216695.1\| polyketide cyclase/dehydrase family protein [Salmonella enterica su...	163.0	[0..1]	[155..1]
gi\|21959995, gi\|... - gi\|22126954\|ref\|NP_670377.1\| hypothetical protein y3078 [Yersinia pestis KIM], gi\|21959995\|gb\|AAM866... gi\|45435746, gi\|... - gi\|45440888\|ref\|NP_992427.1\| hypothetical protein YP_1054 [Yersinia pestis biovar Microtus str. 9100...	159.0	[0..10]	[157..31]
gi\|75241604 - gi\|75241604\|ref\|ZP_00725441.1\| COG2867: Oligoketide cyclase/lipid transport protein [Escherichia col...	159.0	[0..10]	[158..1]
gi\|153947960, gi... - gi\|77632095\|ref\|ZP_00794681.1\| COG2867: Oligoketide cyclase/lipid transport protein [Yersinia pseudo...	159.0	[0..14]	[157..1]
gi\|56460005, gi\|... - gi\|56460005\|ref\|YP_155286.1\| oligoketide cyclase/lipid transport protein, putative [Idiomarina loihi...	159.0	[0..14]	[158..1]
gi\|77974742 - gi\|77974742\|ref\|ZP_00830281.1\| COG2867: Oligoketide cyclase/lipid transport protein [Yersinia freder...	159.0	[0..14]	[157..1]
gi\|85711976, gi\|... - gi\|85711976\|ref\|ZP_01043030.1\| Oligoketide cyclase/lipid transport protein, putative [Idiomarina bal...	158.0	[0..14]	[156..1]
gi\|110592880, gi... - gi\|110592880\|ref\|ZP_01381235.1\| cyclase/dehydrase [Acidovorax sp. JS42], gi\|110337825\|gb\|EAT57536.1\|...	158.0	[0..14]	[156..36]

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Predicted Domain #1

Region A:
Residues: [1-158]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MILFVGFLLM EIVMPQISRT ALVPYSAEQM YQLVNDVQSY PQFLPGCTGS RILESTPGQM  60
   61 TAAVDVSKAG ISKTFTTRNQ LTSNQSILMN LVDGPFKKLI GGWKFTPLSQ EACRIEFHLD 120
  121 FEFTNKLIEL AFGRVFKELA ANMVQAFTVR AKEVYSAR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	23.69897
Match:	1t17A
Description:	Solution Structure of the 18 kDa Protein CC1736 from Caulobacter crescentus: The Northeast Structural Genomics Consortium Target CcR19
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.0116392906163881	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: