YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|229689190, gi...
Organism:	Yersinia pestis biovar Orientalis str. India 195
Length:	531 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|229689190, gi....

Description	E-value	Query Range	Subject Range
gi\|51595845, gi\|... - gi\|51595845\|ref\|YP_070036.1\| ABC transporter ATP-binding protein [Yersinia pseudotuberculosis IP 329... Q66C98\|Q66C98_YERPS - ABC transporter ATP-binding protein - Yersinia pseudotuberculosis	0.0	[1..529]	[57..585]
gi\|108812648, gi... - gi\|108812648\|ref\|YP_648415.1\| ABC transporter ATP-binding protein [Yersinia pestis Nepal516], gi\|108... gi\|166207432, gi... - gi\|166211661\|ref\|ZP_02237696.1\| ABC transporter, ATP-binding protein [Yersinia pestis biovar Antiqua... gi\|22126556, gi\|... - gi\|22126556\|ref\|NP_669979.1\| ABC transporter ATP-binding protein [Yersinia pestis KIM], gi\|21959559\|... gi\|108806784, gi... - gi\|108806784\|ref\|YP_650700.1\| ABC transporter ATP-binding protein [Yersinia pestis Antiqua], gi\|1087... gi\|167421800, gi... - gi\|167421800\|ref\|ZP_02313553.1\| ABC transporter, ATP-binding protein [Yersinia pestis biovar Orienta... gi\|45436066, gi\|... - gi\|45441206\|ref\|NP_992745.1\| ABC transporter ATP-binding protein [Yersinia pestis biovar Microtus st... gi\|165939634, gi... - gi\|165939634\|ref\|ZP_02228178.1\| ABC transporter, ATP-binding protein [Yersinia pestis biovar Orienta... gi\|166012112, gi... - gi\|166012112\|ref\|ZP_02233010.1\| ABC transporter, ATP-binding protein [Yersinia pestis biovar Antiqua... gi\|162419791, gi... - gi\|162419791\|ref\|YP_001607368.1\| ABC transporter ATP-binding protein [Yersinia pestis Angola], gi\|16... gi\|165923540, gi... - gi\|165924480\|ref\|ZP_02220312.1\| ABC transporter, ATP-binding protein [Yersinia pestis biovar Orienta... gi\|145598768, gi... - gi\|145598768\|ref\|YP_001162844.1\| ABC transporter ATP-binding protein [Yersinia pestis Pestoides F], ... gi\|167057191, gi... - gi\|167424342\|ref\|ZP_02316095.1\| ABC transporter, ATP-binding protein [Yersinia pestis biovar Mediaev...	0.0	[1..529]	[57..585]
gi\|48855897 - gi\|48855897\|ref\|ZP_00310055.1\| COG1123: ATPase components of various ABC-type transport systems, con... gi\|110636885, gi... - gi\|110636885\|ref\|YP_677092.1\| ABC transporter, ATP-binding protein [Cytophaga hutchinsonii ATCC 3340...	0.0	[1..531]	[13..583]
gi\|110342616, gi... - gi\|110641024\|ref\|YP_668752.1\| ABC transporter ATP-binding protein [Escherichia coli 536], gi\|1103426... gi\|218369179, gi... - gi\|218699193\|ref\|YP_002406822.1\| putative transporter fused subunits of ABC superfamily: ATP-binding... gi\|218694293, gi... - gi\|218694293\|ref\|YP_002401960.1\| putative transporter fused subunits of ABC superfamily: ATP-binding... gi\|218688604, gi... - gi\|218688604\|ref\|YP_002396816.1\| putative transporter fused subunits of ABC superfamily: ATP-binding... gi\|218557725, gi... - gi\|218557725\|ref\|YP_002390638.1\| putative transporter fused subunits of ABC superfamily: ATP-binding... gi\|227884215, gi... - gi\|227884215\|ref\|ZP_04002020.1\| ABC superfamily ATP binding cassette transporter, ABC protein [Esche... gi\|251784339, gi... - gi\|251784339\|ref\|YP_002998643.1\| hypothetical protein B21_00804 [Escherichia coli BL21], gi\|24237661... gi\|238861243, gi... - gi\|238900079\|ref\|YP_002925875.1\| fused putative transporter subunits of ABC superfamily: ATP-binding... gi\|254160897, gi... - gi\|254160897\|ref\|YP_003044005.1\| fused predicted transporter subunits of ABC superfamily: ATP-bindin... gi\|253325221, gi... - gi\|254287711\|ref\|YP_003053459.1\| fused predicted transporter subunits of ABC superfamily: ATP-bindin... gi\|254792016, gi... - gi\|254792016\|ref\|YP_003076853.1\| putative ABC transporter with two ATP-binding domains [Escherichia ... gi\|189377736, gi... - gi\|189377736\|gb\|EDU96152.1\| ABC transporter, ATP-binding protein [Escherichia coli O157:H7 str. EC50... gi\|168787039, gi... - gi\|189373182\|gb\|EDU91598.1\| ABC transporter, ATP-binding protein [Escherichia coli O157:H7 str. EC86... gi\|189003005, gi... - gi\|189003005\|gb\|EDU71991.1\| ABC transporter, ATP-binding protein [Escherichia coli O157:H7 str. EC40... gi\|168776359, gi... - gi\|187768209\|gb\|EDU32053.1\| ABC transporter, ATP-binding protein [Escherichia coli O157:H7 str. EC41... gi\|188487627, gi... - gi\|188492428\|ref\|ZP_02999698.1\| ABC transporter, ATP-binding protein [Escherichia coli 53638], gi\|18... gi\|170681928, gi... - gi\|170681928\|ref\|YP_001742924.1\| ABC transporter, ATP-binding protein [Escherichia coli SMS-3-5], gi... gi\|169888314, gi... - gi\|170080479\|ref\|YP_001729799.1\| ABC transporter ATP-binding protein [Escherichia coli str. K-12 sub... gi\|170020824, gi... - gi\|170020824\|ref\|YP_001725778.1\| ABC transporter related [Escherichia coli ATCC 8739], gi\|169755752\|... gi\|168767328, gi... - gi\|189363419\|gb\|EDU81838.1\| ABC transporter, ATP-binding protein [Escherichia coli O157:H7 str. EC44... gi\|168763332, gi... - gi\|189366538\|gb\|EDU84954.1\| ABC transporter, ATP-binding protein [Escherichia coli O157:H7 str. EC45... gi\|168756612, gi... - gi\|189356248\|gb\|EDU74667.1\| ABC transporter, ATP-binding protein [Escherichia coli O157:H7 str. EC44... gi\|168750002, gi... - gi\|188015687\|gb\|EDU53809.1\| ABC transporter, ATP-binding protein [Escherichia coli O157:H7 str. EC41... gi\|209918068, gi... - gi\|209918068\|ref\|YP_002292152.1\| ABC transporter ATP-binding component [Escherichia coli SE11], gi\|2... gi\|157065978, gi... - gi\|157160298\|ref\|YP_001457616.1\| ABC transporter, ATP-binding protein [Escherichia coli HS], gi\|1570... gi\|209398822, gi... - gi\|209398822\|ref\|YP_002269489.1\| ABC transporter, ATP-binding protein [Escherichia coli O157:H7 str.... gi\|157156320, gi... - gi\|157156320\|ref\|YP_001462015.1\| ABC transporter, ATP-binding protein [Escherichia coli E24377A], gi... gi\|208738122, gi... - gi\|208822637\|ref\|ZP_03262956.1\| ABC transporter, ATP-binding protein [Escherichia coli O157:H7 str. ... gi\|208815250, gi... - gi\|208815250\|ref\|ZP_03256429.1\| ABC transporter, ATP-binding protein [Escherichia coli O157:H7 str. ... gi\|218553405, gi... - gi\|218553405\|ref\|YP_002386318.1\| putative transporter fused subunits of ABC superfamily: ATP-binding... gi\|218548341, gi... - gi\|218548341\|ref\|YP_002382132.1\| putative transporter fused subunits of ABC superfamily: ATP-binding... gi\|217326139, gi... - gi\|217326139\|ref\|ZP_03442223.1\| ABC transporter, ATP-binding protein [Escherichia coli O157:H7 str. ... gi\|215263979, gi... - gi\|215485907\|ref\|YP_002328338.1\| fused predicted transporter subunits of ABC superfamily: ATP-bindin... gi\|193069364, gi... - gi\|193069364\|ref\|ZP_03050319.1\| ABC transporter, ATP-binding protein [Escherichia coli E110019], gi\|... gi\|89107671, gi\|... - gi\|89107671\|ref\|AP_001451.1\| fused predicted transporter subunits and ATP-binding components of ABC ... gi\|192928947, gi... - gi\|193064485\|ref\|ZP_03045566.1\| ABC transporter, ATP-binding protein [Escherichia coli E22], gi\|1929... gi\|91209855, gi\|... - gi\|91209855\|ref\|YP_539841.1\| ABC transporter ATP-binding protein [Escherichia coli UTI89], gi\|910714... gi\|190905986, gi... - gi\|191173736\|ref\|ZP_03035259.1\| ABC transporter, ATP-binding protein [Escherichia coli F11], gi\|1909... gi\|13360356, gi\|... - gi\|15830151\|ref\|NP_308924.1\| putative ATP-binding component of a transport system [Escherichia coli ... gi\|191166150, gi... - gi\|191166150\|ref\|ZP_03027984.1\| ABC transporter, ATP-binding protein [Escherichia coli B7A], gi\|1909... gi\|208726047, gi... - gi\|208806246\|ref\|ZP_03248583.1\| ABC transporter, ATP-binding protein [Escherichia coli O157:H7 str. ... gi\|195936861 - gi\|195936861\|ref\|ZP_03082243.1\| ABC transporter ATP-binding protein [Escherichia coli O157:H7 str. E... gi\|194422618, gi... - gi\|194438394\|ref\|ZP_03070484.1\| ABC transporter, ATP-binding protein [Escherichia coli 101-1], gi\|19... gi\|194428232, gi... - gi\|194428232\|ref\|ZP_03060775.1\| ABC transporter, ATP-binding protein [Escherichia coli B171], gi\|194... EG13325 - ABC-F family putative regulatory ATPase / ABC-F family putative regulatory ATPase, function unknown YBIT_ECO57 - Uncharacterized ABC transporter ATP-binding protein YbiT OS=Escherichia coli O157:H7 GN=ybiT PE=3 SV... YBIT_ECOL6 - Uncharacterized ABC transporter ATP-binding protein YbiT OS=Escherichia coli O6:H1 (strain CFT073 / ... gi\|15800572, gi\|... - gi\|15800572\|ref\|NP_286584.1\| putative ATP-binding component of a transport system [Escherichia coli ... EG13325 - ABC-F family putative regulatory ATPase / ABC-F family putative regulatory ATPase, function unknown YBIT_ECOLI - Hypothetical ABC transporter ATP-binding protein ybiT - Escherichia coli gi\|124501382, gi... - gi\|124527037\|ref\|ZP_01698874.1\| ABC transporter related [Escherichia coli B], gi\|124501382\|gb\|EAY488... YBIT_ECOL6 - Uncharacterized ABC transporter ATP-binding protein YbiT OS=Escherichia coli O6 GN=ybiT PE=3 SV=1 gi\|117623000, gi... - gi\|117623000\|ref\|YP_851913.1\| putative ATP-binding component of a transport system [Escherichia coli...	0.0	[1..530]	[1..530]
gi\|30062303, gi\|... - gi\|30062303\|ref\|NP_836474.1\| putative ATP-binding component of a transport system [Shigella flexneri... gi\|24112187, gi\|... - gi\|24112187\|ref\|NP_706697.1\| putative ATP-binding component of a transport system [Shigella flexneri... gi\|110804819, gi... - gi\|110804819\|ref\|YP_688339.1\| putative ATP-binding component of a transport system [Shigella flexner...	0.0	[1..530]	[1..530]
gi\|187731307, gi... - gi\|187731307\|ref\|YP_001880992.1\| ABC transporter, ATP-binding protein [Shigella boydii CDC 3083-94],... gi\|81244676, gi\|... - gi\|82543265\|ref\|YP_407212.1\| putative ATP-binding component of a transport system [Shigella boydii S...	0.0	[1..530]	[1..530]
gi\|37525485, gi\|... - gi\|37525485\|ref\|NP_928829.1\| ABC transporter ATP-binding protein [Photorhabdus luminescens subsp. la...	0.0	[1..529]	[1..529]
gi\|15158466, gi\|... - gi\|15890270\|ref\|NP_355942.1\| hypothetical protein AGR_L_318 [Agrobacterium tumefaciens str. C58], gi... gi\|25384809 - pir\|\|E98150 hypothetical ABC transporter ATP-binding protein in bcr 5'region [imported] - Agrobacter...	0.0	[1..531]	[45..588]
gi\|91797688, gi\|... - gi\|92114598\|ref\|YP_574526.1\| ABC transporter related [Chromohalobacter salexigens DSM 3043], gi\|9179...	0.0	[1..530]	[1..528]
gi\|117674042, gi... - gi\|77628730\|ref\|ZP_00791316.1\| COG0488: ATPase components of ABC transporters with duplicated ATPase...	0.0	[10..529]	[2..521]

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Predicted Domain #1

Region A:
Residues: [1-531]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSTNNITMQ FGSKPLFENI SVKFGGGNRY GLIGANGCGK STFMKILGGD LVPSGGNVFL  60
   61 DPNERLGKLR QDQFAFENNT VLDTVIMGHG ELWEVKEERD RIYAMAEMSE EDGYKVADLE 120
  121 VAYGEMDGYS AEARAGELLL GVGIPVEQHY GLMSEIAPGW KLRVLLAQAL FSDPEILLLD 180
  181 EPTNNLDIDT IRWLEQVLNE RNSTMIIISH DRHFLNMVCT HMADLDYGEL RVYPGNYDEY 240
  241 MTAATQARER LLSDNAKKKA QISELQSFVS RFSANASKSK QATSRARQID KIQLDEVKAS 300
  301 SRQNPFIRFD QDRKLFRNAL EVEMLTKGFD NGPLFKNLTL RLEVGEKVAI LGPNGIGKST 360
  361 LLKTLLGEYE SDAGTVKWSE NSKIGYYAQD HASDFDIDLT VFDWMSQWKQ EKDDEQAVRS 420
  421 VLGRLLFSQD DIKKKVSVLS GGEKGRMLFG KLMMQRPNIL VMDEPTNHLD MESIESLNMA 480
  481 LEMYEGTLIF VSHDREFVSS LATRVIEMTP NKLIDFTGNY EDYLSSQGIH S

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	55.522879
Match:	1yqtA
Description:	RNase-L Inhibitor
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits