YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|229696932, gi...
Organism:	Yersinia pestis biovar Orientalis str. PEXU2
Length:	243 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|229696932, gi....

Description	E-value	Query Range	Subject Range
gi\|167425098, gi... - gi\|167425098\|ref\|ZP_02316851.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Yersinia pestis biov... gi\|21960466, gi\|... - gi\|22127380\|ref\|NP_670803.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Yersinia pestis KIM], g...	2.0E-55	[1..243]	[1..243]
gi\|27362190, gi\|... - gi\|27365990\|ref\|NP_761518.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Vibrio vulnificus CMCP6...	1.0E-53	[1..243]	[1..244]
gi\|77959539, gi\|... - gi\|77959539\|ref\|ZP_00823558.1\| COG0204: 1-acyl-sn-glycerol-3-phosphate acyltransferase [Yersinia ber...	7.0E-53	[1..239]	[1..239]
gi\|116219659, gi... - gi\|75819123\|ref\|ZP_00749220.1\| COG0204: 1-acyl-sn-glycerol-3-phosphate acyltransferase [Vibrio chole...	9.0E-53	[1..239]	[1..239]
gi\|91225573, gi\|... - gi\|91225573\|ref\|ZP_01260647.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Vibrio alginolyticus ... gi\|254229288, gi... - gi\|75856340\|ref\|ZP_00763970.1\| COG0204: 1-acyl-sn-glycerol-3-phosphate acyltransferase [Vibrio sp. E...	1.0E-52	[1..241]	[1..241]
gi\|59479110, gi\|... - gi\|59711009\|ref\|YP_203785.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Vibrio fischeri ES114],...	3.0E-52	[1..241]	[12..253]
gi\|75827771 - gi\|75827771\|ref\|ZP_00757206.1\| COG0204: 1-acyl-sn-glycerol-3-phosphate acyltransferase [Vibrio chole... gi\|229354934, gi... - gi\|229507429\|ref\|ZP_04396934.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Vibrio cholerae BX 3... gi\|116189455, gi... - gi\|75830552\|ref\|ZP_00759828.1\| COG0204: 1-acyl-sn-glycerol-3-phosphate acyltransferase [Vibrio chole... gi\|75815119 - gi\|75815119\|ref\|ZP_00745644.1\| COG0204: 1-acyl-sn-glycerol-3-phosphate acyltransferase [Vibrio chole... gi\|75824174, gi\|... - gi\|75824174\|ref\|ZP_00753637.1\| COG0204: 1-acyl-sn-glycerol-3-phosphate acyltransferase [Vibrio chole... gi\|229338077, gi... - gi\|229524496\|ref\|ZP_04413901.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Vibrio cholerae bv. ... gi\|229516771, gi... - gi\|229516771\|ref\|ZP_04406217.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Vibrio cholerae RC9]... gi\|229513439, gi... - gi\|229513439\|ref\|ZP_04402903.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Vibrio cholerae TMA ... gi\|229353120, gi... - gi\|229509646\|ref\|ZP_04399127.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Vibrio cholerae B33]... gi\|229369591, gi... - gi\|229606936\|ref\|YP_002877584.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Vibrio cholerae MJ-... gi\|229335184, gi... - gi\|229527552\|ref\|ZP_04416944.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Vibrio cholerae 1212... tr\|A0A085QC14\|A0... - 1-acyl-sn-glycerol-3-phosphate acyltransferase OS=Vibrio cholerae GN=DN30_1636 PE=3 SV=1	3.0E-52	[1..239]	[1..239]
gi\|52424565, gi\|... - gi\|52424565\|ref\|YP_087702.1\| PlsC protein [Mannheimia succiniciproducens MBEL55E], gi\|52306617\|gb\|AA...	3.0E-52	[1..237]	[1..238]
gi\|12720314, gi\|... - gi\|15601968\|ref\|NP_245040.1\| hypothetical protein PM0103 [Pasteurella multocida subsp. multocida str...	5.0E-52	[1..238]	[1..239]
gi\|49609831, gi\|... - gi\|50119305\|ref\|YP_048472.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Pectobacterium atrosept...	6.0E-52	[1..243]	[1..244]

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Predicted Domain #1

Region A:
Residues: [1-243]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLLILRTVLA VLYCFLVCVF GSIYCLFSPR NPRHVATFSH LFGRMSVLFG ITIEQRIPAE  60
   61 AAKYGNCIYI ANHQNNYDMV TMSNVVQPGT VTVGKKSLLW VPLFGPLYWL TGNLLIDRDN 120
  121 RAKAHSTIAQ VVEQVQKRNI SIWMFPEGTR SRGRGLLPFK TGAFHAAIAA GVPIVPICVS 180
  181 STNGIKLNRW SNGKVIIEML PPIDTSGYTK ERVRELSEHC RNLMLAKIEQ LDAEVAQQSV 240
  241 AKK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	5.69897
Match:	1iuqA
Description:	The 1.55 A Crystal Structure of Glycerol-3-Phosphate Acyltransferase
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits