YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|229512146, gi...
Organism:	Vibrio cholerae B33
Length:	173 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|229512146, gi....

Description	E-value	Query Range	Subject Range
gi\|37679048, gi\|... - gi\|37679048\|ref\|NP_933657.1\| riboflavin synthase subunit beta [Vibrio vulnificus YJ016], gi\|37197790...	255.0	[0..1]	[173..1]
RISB_VIBPA - 6,7-dimethyl-8-ribityllumazine synthase OS=Vibrio parahaemolyticus GN=ribH PE=3 SV=1 gi\|219549220, gi... - gi\|254507847\|ref\|ZP_05119977.1\| 6,7-dimethyl-8-ribityllumazine synthase [Vibrio parahaemolyticus 16]... RISB_VIBCB - 6,7-dimethyl-8-ribityllumazine synthase OS=Vibrio campbellii (strain ATCC BAA-1116 / BB120) GN=ribH ... RISB_VIBPA - 6,7-dimethyl-8-ribityllumazine synthase OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 22106...	241.0	[0..18]	[173..1]
gi\|1773099 - gi\|1773099\|gb\|AAB40171.1\| probable riboflavin synthase beta chain [Escherichia coli] gi\|26246420, gi\|... - gi\|26246420\|ref\|NP_752459.1\| riboflavin synthase subunit beta [Escherichia coli CFT073], gi\|26106818... gi\|24111793, gi\|... - ref\|NP_706303.1\| probable riboflavin synthase beta chain [Shigella flexneri 2a str. 301], gb\|AAN420...	240.0	[0..1]	[173..16]
gi\|91209483, gi\|... - gi\|91209483\|ref\|YP_539469.1\| riboflavin synthase beta chain [Escherichia coli UTI89], gi\|91071057\|gb... gi\|117622676, gi... - gi\|117622676\|ref\|YP_851589.1\| riboflavin synthase subunit beta [Escherichia coli APEC O1], gi\|115511... gi\|226898801, gi... - gi\|237707591\|ref\|ZP_04538072.1\| riboflavin synthase subunit beta [Escherichia sp. 3_2_53FAA], gi\|226...	240.0	[0..1]	[173..16]
gi\|75814844 - gi\|75814844\|ref\|ZP_00745389.1\| COG0054: Riboflavin synthase beta-chain [Vibrio cholerae V52] gi\|75827556 - gi\|75827556\|ref\|ZP_00756991.1\| COG0054: Riboflavin synthase beta-chain [Vibrio cholerae O395] RISB_VIBCH - 6,7-dimethyl-8-ribityllumazine synthase OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor I... RISB_VIBCH - 6,7-dimethyl-8-ribityllumazine synthase OS=Vibrio cholerae GN=ribH PE=3 SV=2 gi\|75828877, gi\|... - gi\|75828877\|ref\|ZP_00758209.1\| COG0054: Riboflavin synthase beta-chain [Vibrio cholerae MO10], gi\|11...	239.0	[0..18]	[173..1]
gi\|110804437, gi... - gi\|110804437\|ref\|YP_687957.1\| riboflavin synthase subunit beta [Shigella flexneri 5 str. 8401], gi\|1...	239.0	[0..1]	[173..2]
gi\|84394360, gi\|... - gi\|84394360\|ref\|ZP_00993081.1\| riboflavin synthase subunit beta [Vibrio splendidus 12B01], gi\|843750... gi\|85834727, gi\|... - gi\|86147434\|ref\|ZP_01065746.1\| riboflavin synthase subunit beta [Vibrio sp. MED222], gi\|85834727\|gb\|...	238.0	[0..18]	[173..1]
gi\|45440598, gi\|... - gi\|45440598\|ref\|NP_992137.1\| riboflavin synthase subunit beta [Yersinia pestis biovar Microtus str. ... gi\|22124908, gi\|... - gi\|22124908\|ref\|NP_668331.1\| riboflavin synthase subunit beta [Yersinia pestis KIM], gi\|21957744\|gb\|...	236.0	[0..5]	[172..8]
RISB_VIBVU - 6,7-dimethyl-8-ribityllumazine synthase OS=Vibrio vulnificus GN=ribH PE=3 SV=1 RISB_VIBVY - 6,7-dimethyl-8-ribityllumazine synthase OS=Vibrio vulnificus (strain YJ016) GN=ribH PE=3 SV=2 RISB_VIBVU - 6,7-dimethyl-8-ribityllumazine synthase OS=Vibrio vulnificus (strain CMCP6) GN=ribH PE=3 SV=1	235.0	[0..18]	[173..1]
gi\|116183543, gi... - gi\|75853949\|ref\|ZP_00761683.1\| COG0054: Riboflavin synthase beta-chain [Vibrio sp. Ex25], gi\|1161835... gi\|91225066, gi\|... - gi\|91225066\|ref\|ZP_01260288.1\| riboflavin synthase subunit beta [Vibrio alginolyticus 12G01], gi\|911...	234.0	[0..18]	[173..1]

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Predicted Domain #1

Region A:
Residues: [1-173]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLESGDSHLM NRVKGKLMKV IEGGFPAPNA KIAIVISRFN SFINESLLSG AIDTLKRHGQ  60
   61 ISDDNITVVR CPGAVELPLV AQRVAKTGDY DAIVSLGCVI RGGTPHFDYV CSEMNKGLAQ 120
  121 VSLEFSIPVA FGVLTVDTID QAIERAGTKA GNKGAEAALS ALEMINVLSE IDS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	58.39794
Match:	1rvvA
Description:	Lumazine synthase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
6,7-dimethyl-8-ribityllumazine synthase activity	5.61825642183907	bayes_pls_golite062009
intramolecular transferase activity, transferring acyl groups	4.02275160603209	bayes_pls_golite062009
catalytic activity	1.78070169551865	bayes_pls_golite062009
riboflavin synthase activity	1.72639804812167	bayes_pls_golite062009
isomerase activity	0.233413658370014	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: